Bioinformatics Journal Club

Winter Semester 2007/2008

Every Monday, 18.00 c.t., U10-146

Jens Stoye and Nils Hoffmann

Topics:

Time table:

15.10.07 Jens Stoye, Nils Hoffmann Preliminaries
22.10.07 Paul Medvedev {{:teaching:2007winter:jclub/:notes:10_22_07.html | Introduction to Haplotyping }} {{:teaching:2007winter:jclub/:paper:journal_club_myers.pdf | pdf }}
{{:teaching:2007winter:jclub/:paper:journal_club_song.pdf | pdf }}
29.10.07 Graduate School Retreat No paper
05.11.07 Jose Amgarten Quitzau Finding Founder Sequences {{:teaching:2007winter:jclub/:paper:wabi2002.ps | ps }}
12.11.07 Jens Stoye Inference of Haplotypes {{:teaching:2007winter:jclub/:paper:cla-1990.pdf | pdf }}
{{:teaching:2007winter:jclub/:paper:gus-2001.pdf | pdf }}
19.11.07 Martin Milanic {{:teaching:2007winter:jclub/:notes:11_19_07.html | Algorithms for haplotyping problems }} external pdf
external pdf
26.11.07 Tobias Wittkop An efficient algorithm for large scale detection of protein families {{:teaching:2007winter:jclub/:paper:tribemcl.pdf | pdf }}
{{:teaching:2007winter:jclub/:paper:mcl.pdf | pdf }}
03.12.07 Yoan Diekmann {{:teaching:2007winter:jclub/:notes:12_03_07.html | Spectral Clustering of Protein Sequences }} {{:teaching:2007winter:jclub/:paper:spectral.pdf | pdf }}
{{:teaching:2007winter:jclub/:paper:evaluation.pdf | pdf }}
10.12.07 Nils Hoffmann Clustering by Passing Messages Between Data Points {{:teaching:2007winter:jclub/:paper:frey.pdf | pdf }}
07.01.08 Stefanie Schirmer Non-coding RNA genes and the modern RNA world {{:teaching:2007winter:jclub/:paper:eddy.pdf | pdf }}
{{:teaching:2007winter:jclub/:paper:storz.pdf | pdf }}
14.01.08 Peter Husemann RNA stem-loops: To be or not to be cleaved by RNAse III {{:teaching:2007winter:jclub/:paper:ritchie.pdf | pdf }}
04.02.08 Wolfgang Gerlach GUUGLe: a utility for fast exact matching under RNA complementary rules including G-U base pairing. {{:teaching:2007winter:jclub/:paper:gerlach.pdf | pdf }}