====== Selected Topics in Algorithmic Bioinformatics ======
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|392130 |Lipták |Winter 2008/2009 |Wed 10-12, T2-149 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=8269056|ekvv]] |

===== Organisational Matters =====


==== Lecture ====

  * Note: This course will be taught in English. 
  * Klausur: Wed 11 Feb. 2009 10-12 in H10 
  * Nachklausur: Wed 11 March 2009 10-12 in T2-149 


==== Exercise Sessions ====

  * Group 1: Wed 14-16, U10-146 
  * Group 2: Time: Thu 10-12, Place: U10-146 


==== Timetable ====

| **No.** | **Date** | **Topic** | **Exercise Sheet** |
| 1 | 15/10/2008 | Overview, Introduction to Phylogenetics | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise1.pdf|exercise1.pdf]] |
| 2 | 22/10/2008 | Phylogenetics: Distance-based methods | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise2.pdf|exercise2.pdf]] |
| 3 | 29/10/2008 | Phylogenetics: Distance-based methods (cont.) | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise3.pdf|exercise3.pdf]] |
| 4 | 5/11/2008 |Phylogenetics: Perfect Phylogeny | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise4.pdf|exercise4.pdf]] |
| 5 | 12/11/2008 | Phylogenetics: PP (cont.) | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise5.pdf|exercise5.pdf]] |
| 6 | 19/11/2008 | Phylogenetics: Small Parsimony | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise6.pdf|exercise6.pdf]] |
| 7 | 26/11/2007 | Phylogenetics: Large Parsimony | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise7.pdf|exercise7.pdf]] |
| 8 | 3/12/2007 | Lecture cancelled for attendance of Gene Myers' lecture in H13 | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise8.pdf|exercise8.pdf]] |
| 9 | 10/12/2008 | NP completeness ([[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/lecture_notes/chapter5.pdf|Preliminary lecture notes]] of lectures 9 and 10) | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise9.pdf|exercise9.pdf]] |
| 10 | 17/12/2008 | NP completeness (cont.) | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise10.pdf|exercise10.pdf]] |
| 11 | 7/1/2009 | Probabilistic models ([[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/lecture_notes/chapter6.pdf|Preliminary lecture notes]] of lectures 11 to 13) | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise11.pdf|exercise11.pdf]] |
| 12 | 14/1/2009 | Markov Chains and Hidden Markov Models | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise12.pdf|exercise12.pdf]] |
| 13 | 21/1/2008 | HMMs: Algorithms | [[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/uebungen/exercise13.pdf|exercise13.pdf]] |
| 14 | 28/1/2008 | The Money Changing Problem ([[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/lecture_notes/MCP_lecture.pdf|slides]]) | --- |
| 15 | 4/2/2008 | The big picture: What did we do, and how does it all fit? ([[http://gi.cebitec.uni-bielefeld.de/teaching/2008winter/algBioinform/lecture_notes/overview.pdf|Overview]]) | --- |Back to [[:Teaching|Teaching]]