====== Bioinformatics Journal Club ======
\\ 


|392169 |Marília Braga |Summer 2009 |Mo. 18-20 in U10-146 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=10754219|ekvv]] |

==== Topics: ====

  * Simulating evolution 
  * Hot topics and articles in Science and Nature 
  * Current research 


==== Time table: ====

| **Section "Simulation of Evolution"** (organized by Jens Stoye) |
| April 20 | [[http://bioinformatics.oxfordjournals.org/cgi/reprint/14/2/157.pdf|Rose]] | Eyla Willing |
| April 27 | [[http://bioinformatics.oxfordjournals.org/cgi/reprint/21/Suppl_3/iii31.pdf|DAWG]] | Kai-Frederic Engelmann |
| [[http://mbe.oxfordjournals.org/cgi/reprint/24/3/640.pdf|indel-Seq-Gen, Strope ''et al.'']] | Stefan Marfilius |
|  May 04 | [[http://genomebiology.com/content/pdf/gb-2008-9-10-r147.pdf|Varadarajan et al.]] | Christoph Brinkrolf |
| [[http://www.pnas.org/content/105/38/14254.full.pdf+html?sid=38965c59-a832-411c-bbf9-e06cbe3cd7bb|Ma et al.]] | Madis Rumming |
| **Section "Metabolic Reconstruction //In Silico//"** (organized by Patrick Schwientek) |
|  May 11 | paper selection | |
|  May 18 | In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network | Heiko Neuweger |
|  May 25 | Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach | Nils Hoffmann |
| June 01 | -- holiday -- | |
| June 08 | Parameter estimation of //in silico// biological pathways with particle filtering towards a petascale computing | Daniel Dörr |
| June 15 | at 17:15 [[internal:cebitec|CeBiTec]] Distinguished Lecture in ZiF | Rudolf Amann |
| June 22 | [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000312|Genome-scale reconstruction of ''Escherichia coli's'' transcriptional and translational machinery: a knowledge-base, its mathematical formulation, and its functional characterization]] | Jens Stoye |
| June 29 | Natural computation meta-heuristics for //in-silico// optimization of microbial strains | Patrick Schwientek |
| **Section "Combinatorics of Genome Rearrangements"** (organized by Marília Braga) |
|  July 06 | Multichromosomal Genome Median and Halving Problems | Marília Braga |
|  July 13 | SCJ: a variant of breakpoint distance for which sorting, genome median and genome halving problems are easy | Jens Stoye |Back to [[:Teaching|Teaching]]