===== Interface (Schnittstelle) =====
We need/provide the following parameters: 


  * Edge length 
  * String/Sequence (lowest level annotation) 
  * Substitution probabilities Preferred: [[:HashMap|HashMap]]<Character, [[:MagicTable|MagicTable]]> ==> Either complete [[:HashMap|HashMap]], or probability array for each character separately 
  * Deletion probabilities for each position (prob array) of the **given** sequence 
  * Probabilities for insertions: 
    - for each position of the **given** sequence 
    - for each inserted character of the alphabet 

    Maximal (and minimal?) legth of an insertion/deletion (if needed, treat separately) 
An Example could be: 



<file>evolve(
  double/int edgeLength,
  Sequence s,
  HashMap<Character,MagicTable> substitutionTable,
  Double[] insProb,
  Double[] insPos,
  Double[] delPos,
  int maxLength
){...}

evolve(10, "AGCTAA", ..., new Double[]{0.2,0.2,0.3,0.3}, new Double[]{0.3,0.2,0.2,0.3}, ..., ..., 2);</file>