====== Classical Papers in Bioinformatics (Seminar in SS 2010) ======
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|392172 |Marilia Braga | Mo 16-18 | U10-146 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=16762908|ekvv]] |

==== Office Hours: ====
every Wednesday from 16.00 to 17.00 in room U10-141 



==== Calendar: ====

|14.04.2010 | Introduction | Marilia |
|19.04.2010 | Organization | Marilia |
|26.04.2010 | --- | |
|03.05.2010 | Identification of Common Molecular Subsequences ({{ 529DPandSmithWaterman.pdf | Slides }}) | Yvonne |
|10.05.2010 | Phylogeny ({{ 529cigdem-phylogeny.ppt | Slides }}) | Cigdem |
|17.05.2010 | Microbial gene identification usin interpolated Markov models (GLIMMER) ({{ 529Presentation-Glimmer.pdf | Slides }})  | Dennis |
|24.05.2010 | --- | |
|31.05.2010 | A general method applicable to the search for similarities in the amino acid sequence of two proteins | Saskia |
|07.06.2010 | FASTA  ({{ 529fasta.pdf | Slides }}) | Niclas |
|14.06.2010 | Basic Local Alignment Search Tool ({{ 529BLAST_presentation.pdf | Slides }}) | Martin |
|21.06.2010 | | |
|28.06.2010 | --- | |
|05.07.2010 | Deadline for the first version of the report | All |
|12.07.2010 | | |
|19.07.2010 | --- | |

==== Rules: ====
Oral presentations take 30-40 minutes. Every participant writes a written summary (12-15 pages) of his/her talk. The first version has to be handed in by July 05, 2010.  



==== Topics: ====
In this seminar we will study classical papers in Bioinformatics involving: 


  * Sequence comparison 
  * Function prediction 
  * Phylogeny 
  * ... 
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