====== Bioinformatics Journal Club ======
\\ 


|392169 |Herms, Stoye |Summer 2010 |Monday 14-16 in U10-146 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=16661037|ekvv]] |

===== Topics =====
We read and discuss current research articles from different fields in computational biology.  



===== Schedule =====

| **Date** | **Topic** | **Name** | **Article** |
| 12.04. | Brainstorming/Fixing subjects | Inke Herms | |
| **Section 1: Stochastic Modelling and Simulation Methods** |
| 19.04. | Organization of 1st section | Jens Stoye | |
| 26.04. | Overview about Simulation Methods: MCMC and Applications | Jakub Kovac | |
| 03.05. | --- | ([[internal:cebitec|CeBiTec]] Symposium) | |
| 10.05. | Sampling Realistic Protein Conformations | Lukas Jelonek | {{ 817jc_samplingProteinConformations.pdf | Get PDF }} |
| **Section 1b: Statistical Treatment of Sequencing Errors** |
| 17.05. | Correction of sequencing errors in a mixed set of reads | Christina Ander | {{ 817jc_correctionOfSequencingErrors.pdf | Get PDF }} |
| 24.05. | --- | (Pfingsten) | |
| 31.05. | SHRiMP: Accurate Mapping of Short Color-space Reads | Inke Herms | {{ 817jc_shrimpShortReadMapping.pdf | Get PDF }} |
| **Section 2: Whole Genome Comparison / Genome Rearrangement** |
| 07.06. | Dynamics of Genome Rearrangement in Bacterial Populations | Eyla Willing | {{ 817jc_dynamicsOfGenomeRearrangement.pdf | Get PDF }} |
| 14.06. | Bayesian Estimation of the Number of Inversions in the History of Two Chromosomes | Jens Stoye | {{ 81710665270260518281.pdf | Get PDF }} |
| 21.06. | --- | (BINAS/IfB Workshop @ZIF) | |
| 28.06. | Detecting gene clusters under evolutionary constraint in a large number of genomes | Katharina Jahn | {{ 817jc_geneClusterDetection.pdf | Get PDF }} |
| 05.07. |Analyzing patterns of microbial evolution using the Mauve genome alignment system | Peter Husemann | |
| 12.07. | --- | (ISMB)  | |
| 19.07. | --- |  | |Back to [[:Teaching|Teaching]]