====== Bioinformatics Journal Club ======
\\ 


|392169 |Stoye, Dörr |Winter 2011/12 |Thursday 18-20 in U10-146 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=25664444|ekvv]] |

===== Topics =====
We read and discuss current research articles from different fields in computational biology.  



===== Schedule =====

| **Date** | **Topic** | **Name** | **Article** |
| 13.10.2011 | Preliminaries | Jens Stoye | --- |
| 20.10.2011 | --- | --- | Jens in Berlin |
| 27.10.2011 | --- | --- | Jens in Aarhus |
| 03.11.2011 | Local alignment | Eyla Willing | B. Kehr, D. Weese, K. Reinert (2011) [[http://dx.doi.org/10.1186/1471-2105-12-S9-S15|STELLAR: fast and exact local alignments.]]  BMC Bioinformatics 12(Suppl 9):S15. |
| 10.11.2011 | Metagenomics | Christina Ander | C. Martin, N.N. Diaz, J. Ontrup, T.W. Nattkemper (2008) [[http://dx.doi.org/10.1093/bioinformatics/btn257|Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification.]] Bioinformatics 24(14):1568-1574. |
| 17.11.2011 | Petri nets | Linda Sundermann | S. Janowski //et al.// (2010) [[http://www.bioinfo.de/isb/2010/10/0003/main.html|Modeling of cell-to-cell communication processes with Petri nets using the example of quorum sensing.]] In Silico Biology 10, 0003. |
| 24.11.2011 | RNA shapes | Nina Luhmann | S. Janssen, R. Giegerich (2010) [[http://dx.doi.org/10.1093/bioinformatics/btq014|Faster computation of exact RNA shape probabilities.]] Bioinformatics 26(5):632-639. |
| 01.12.2011 | Data structures | everybody | Christmas and other trees |
| 08.12.2011 | Population genetics | Daniel Dörr | E. Baake, I. Herms (2008) [[http://dx.doi.org/10.1007/s11538-007-9270-5|Single-Crossover Dynamics: Finite versus Infinite Populations.]] Bulletin of Mathematical Biology 70:603–624. |
| 15.12.2011 | Social events | CLIB & Fachschaft | More trees and fluids |
| 22.12.2011 | PPT | everybody | How not to give a talk |
| 29.12.2011 | --- | --- | christmas break |
| 05.01.2011 | --- | --- | christmas break |
| 12.01.2011 | Split decomposition | Roland Wittler | H.-J. Bandelt, A.W.M. Dress (1992) [[http://dx.doi.org/10.1016/1055-7903(92)90021-8|Split decomposition: A new and useful approach to phylogenetic analysis of distance data.]] Mol. Phylogenet. Evol. 1(3):242–252. |
| 19.01.2011 | --- | --- | Jens in Paris |
| 26.01.2011 | --- | --- | [[internal:sequenceworkshop2012|SequenceWorkshop2012]] |
| 02.02.2011 | BWT | Jens Stoye | M. J. Bauer, A. J. Cox, G. Rosone (2011) [[http://www.springerlink.com/content/b55m96rj18462152|Lightweight BWT Construction for Very Large String Collections.]] Proc. of CPM 2011, LNCS 6661, 219-231. |Back to [[:Teaching|Teaching]]