====== Practical Course: Bioinformatic Applications in Genome Research ======
\\ 


|392177 | Wittler, Brink | Summer semester 2014 | Block 18.03.-01.04.2014 - 9-17 Uhr in V6-116 |[[http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=44148271|ekvv]] |

===== Content =====
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.  

Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course. 


  * Requires participation in the lecture "Algorithms in Genome Research". 
  * Beside regular and active participation in the course, results shall also be presented to other participants. 


===== Overview =====

| **Date** | **Topic** | **Who** | **Solution (for next day)**|
| Tue, 18.3. | Shell | -- | Malte, Katharina |
|            | Python | Benedikt | Thomas |
| Wed, 19.3. | Assembly | Kerstin | Kerstin, Annika |
|            | De Brujn Graph | Katharina |  |
| Thu, 20.3. | Mapping, SAM/BAM-Format | Thomas | Franzi, Swenja |
|            | Finishing, PCR/Primer | Franzi |  |
| Fri, 21.3. | Genome Rearrangement | Malte | Tobias, Thomas |
|            | Gene Families | Mehmood |  |
| Mon, 24.3. | Circos | Mark | Tobias, Annika |
|            | UniMoG | Annika |  |
| Tue, 25.3. | Gene Prediction | Mark |  |
| Wed, 26.3. | G/C Rich Regions |  | Mark, Malte |
|            | HMMs | -- |  |
| Thu, 27.3. | Operons, RBSs, TTs | Tobias | Franzi, Swenja  |
| Fri, 28.3. | Human Microbiome Project | Swenja | Kerstin, Katharina |
| Mon, 31.3. | Wrap Up | -- | -- |Back to [[:Teaching|Teaching]]