====== Bioinformatics Journal Club ======
\\ 


| 392172  | Dörr | Winter 2014/2015 | Thursday 18-20 in U10-155 | [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=50310893|ekvv]] |

===== Contents =====
In this seminar we read and discuss current research articles from different fields in bioinformatics. Each participant must present in few minutes two articles of their choice one week before their presentation. The group then votes which article will be discussed in detail in the subsequent week. To this end, the participant who choose the article will take the lead of the discussion. All participants must read the paper and prepare themselves for the discussion.  

The topics of presented papers should be related to bioinformatics, biology, or computer sciences. 



===== Schedule =====

| **Date** | **Topic** | **Name** | **Article** |
|09.10.2014 | Organization of the journal club | Daniel Doerr |  |
|16.10.2014 | --- | --- |  |
|23.10.2014 | (RECOMB-CG) | --- |  |
|30.10.2014 | --- | --- |  |
|06.11.2014 | --- | --- |  |
|13.11.2014 | Efficient storage of high throughput DNA sequencing data using reference-based compression | Liren Huang | [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3083090/|link]] |
|20.11.2014 | Detecting influenza epidemics using search engine query data | YU Jia | [[http://static.googleusercontent.com/media/research.google.com/en//archive/papers/detecting-influenza-epidemics.pdf|link]] |
|27.11.2014 | Why Most Published Research Findings Are False | Pedro Feijao | [[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020124|link]] |
|04.12.2014 | Optimal Aggregation Algorithms for Middleware (extended abstract) | Daniel Doerr | [[http://dl.acm.org/citation.cfm?id=375567|link]] |
|11.12.2014 | The Unreasonable Effectiveness of Mathematics in the Natural Sciences | Nicole Althermeler | [[http://onlinelibrary.wiley.com/doi/10.1002/cpa.3160130102/abstract|link]] |
|18.12.2014 | (pre holiday recovery) | --- | |
|25.12.2014 | (holiday) | --- |  |
|01.01.2015 | (holiday) | --- |  |
|08.01.2015 | ([[:DiDy|DiDy]] retreat) | ---  |  |
|15.01.2015 | The Unreasonable Effectiveness of Data | Nicole Althermeler | [[http://static.googleusercontent.com/media/research.google.com/en//pubs/archive/35179.pdf|link]] |
|22.01.2015 | (recreational break) | -- |  |
|29.01.2015 | A Whole-Cell Computational Model Predicts Phenotype from Genotype | Liren Huang | [[http://www.cell.com/abstract/S0092-8674%2812%2900776-3|link]] |
|05.02.2015 | Continuous base identification for single-molecule nanopore DNA sequencing | YU Jia | [[http://www.nature.com/nnano/journal/v4/n4/abs/nnano.2009.12.html|link]] |
|12.02.2015 | Navigating Central Path with Electrical Flows: from Flows to Matchings, and Back | Pedro Feijao | [[http://thl.epfl.ch/madry/docs/matching_flow.pdf|link]] |Back to [[:Teaching|Teaching]]