====== Bioinformatics Journal Club ======
\\ 


| 392172  | Melidis, Stoye | Winter 2015/2016 | Monday 16-18 in U10-155 | [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=59300217|ekvv]] |

===== Contents =====
In this seminar we read and discuss current research articles from different fields in bioinformatics. Each participant must present in few minutes two articles of their choice one week before their presentation. The group then votes which article will be discussed in detail in the subsequent week. To this end, the participant who proposed the article will take the lead of the discussion. All participants must read the paper and prepare themselves for the discussion.  

The topics of presented papers should be related to bioinformatics, biology, or computer sciences. 



===== Schedule =====

| **Date** | **Topic** | **Name** | **Article** |
| 19.10.2015 | Organization of the journal club | Damianos Melidis, Jens Stoye | -- |
| 26.10.2015 | Sequence Comparison by LSH | Damianos Melidis | [[http://bioinformatics.oxfordjournals.org/content/17/5/419.full.pdf+html|open access]] |
| 02.11.2015 | -- | -- | -- |
| 09.11.2015 | -- | -- | -- |
| 16.11.2015 | Models and Algorithms for Genome Rearrangement with Positional Constraints | Elói Soares de Araújo | [[http://dx.doi.org/10.1007/978-3-662-48221-6_18|online]] |
| 23.11.2015 | (DiDy Retreat) | -- | -- |
| 30.11.2015 | Universal Reconstruction of a String | Omar Castillo | [[http://mimuw.edu.pl/~kociumaka/files/wads2015.pdf|pdf]]|
| 07.12.2015 | Geometric Suffix Tree | Jens Stoye | [[https://www.hgc.jp/~tshibuya/softwares/cpm07%28GeometricSuffixTree%29.pdf|pdf]] |
| 14.12.2015 | A simple framework on sorting permutations | Pedro Feijão | [[http://arxiv.org/abs/1502.07971|pdf]] |
| 21.12.2015 | | | |
| 28.12.2015 | (christmas break) | -- | -- |
| 04.01.2016 | (christmas break) | -- | -- |
| 11.01.2016 | The solution space of sorting by DCJ| Damianos Melidis| [[http://online.liebertpub.com/doi/abs/10.1089/cmb.2010.0109|publisher link]]|
| 18.01.2016 | Character sets of strings|Omar Castillo |[[http://www.sciencedirect.com/science/article/pii/S1570866706000505 | pdf]] |
| 25.01.2016 | DCJ-Indel sorting revisited| Francisco Elói Soares de Araújo| [[http://almob.biomedcentral.com/articles/10.1186/1748-7188-8-6 | open access]]|
| 01.02.2016 |DCJ-Indel sorting revisited (continuation) |Francisco Elói Soares de Araújo| [[http://almob.biomedcentral.com/articles/10.1186/1748-7188-8-6 | open access]]|
| 08.02.2016 | On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance|Pedro Feijão |[[http://www.biomedcentral.com/1471-2105/16/S19/S1 | open access]] |

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