====== Implementation of Algorithms (1Ü) ======

| [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=133282550|392231]] | Stoye | Winter 2018/19 | Class hours by appointment |

== Final presentation: ==

Monday, 2019 January 28, at 14h c.t. in U10-146
__or__ Monday, 2019 February 11, at 14h c.t. in U10-146.


== Procedure: ==

Each participant implements a (simple) algorithm in a programming language of their own choice. Topics will be distributed individually: meet or send email to the organizer, a lecturer of any other class or seminar in the modules //Algorithms in Bioinformatics// or //Special Algorithmus in Bioinformatics//. The focus of the implementation shall be on code readability and optimal asymptotics, which ideally is verified by systematic testing.

The source code and some test data (where applicable) has to be sent to the organiser one week before the final presentation. During the final presentation, every participant runs and explains her/his software in front of everybody. If the result is not satisfactory, a correction can be provided until the end of the semester.


== Distributed topics: ==

^ To be presented January 28, 2019 ^ Name ^
| Extracting splits from a colored compacted de-Bruijn graph | Andreas Rempel |
| <del>Agglomerative clustering</del> | <del>Lukas Micke</del> |
| Konstruktion von Suffixbäumen mit WOTD | Jasmin Hartmann |

^ To be presented February 11, 2019 ^ Name ^
| Hirschberg-Algorithmus in Haskell | Leonard Bohnenkämper |
| Gotoh-Algorithmus für paarweises Alignment mit affinen Gapkosten | Lukas Schulte |
| <del>Sankoff's Small Parsimony</del> | <del>Fabienne Thelen</del> |
| <del>Neighbor Joining</del> | <del>Denis Spoljar</del> |
| Suffix array construction with Manber-Myers | Jannis Göke |

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