====== Bioinformatics Journal Club (2S) ======

| [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=152987077|392172]] | Stoye | Summer 2019 | Monday 16-18 in U10-155 |
===== Contents =====

We read and discuss current research articles from different fields in computational biology. The specific topics will be selected at the beginning of the semester.

To get credit points, students have to show proficiency in reading, discussing and presenting original research papers and other scientific literature.

===== Schedule =====

^ **Date** ^ **Topic** ^ **Name** ^
| 01.04.2019 | choosing a topic | all |
| 08.04.2019 | [[https://doi.org/10.1093/nar/gkx1126| JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework]] | Hussamadin M. Kadhim |
| 15.04.2019 | [[https://doi.org/10.1093/nar/gkw1069| The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms]]| Jens Stoye |
| 22.04.2019 | (Easter Monday) | -- |
| 29.04.2019 | [[https://courses.csail.mit.edu/6.851/fall17/lectures/L15.html| Eric Demaine, Advanced Data Structures, Lecture 15: Least Common & Level Ancestors]] | Fábio H. V. Martinez |
| 06.05.2019 | (CeBiTec Colloquium) | -- |
| 13.05.2019 | [[https://courses.csail.mit.edu/6.851/fall17/lectures/L15.html| Eric Demaine, Advanced Data Structures, Lecture 15: Least Common & Level Ancestors (cont'd)]] | Fábio H. V. Martinez |
| 20.05.2019 | [[https://courses.csail.mit.edu/6.851/fall17/lectures/L16.html| Eric Demaine, Advanced Data Structures, Lecture 16: Strings]] | Fábio H. V. Martinez |
| 27.05.2019 | [[https://courses.csail.mit.edu/6.851/fall17/lectures/L16.html| Eric Demaine, Advanced Data Structures, Lecture 16: Strings (cont'd)]]\\  [[https://courses.csail.mit.edu/6.851/fall17/lectures/L17.html| Eric Demaine, Advanced Data Structures, Lecture 17: Succinct Rank, Select, & Tries]] | Fábio H. V. Martinez |
| 03.06.2019 | [[https://courses.csail.mit.edu/6.851/fall17/lectures/L17.html| Eric Demaine, Advanced Data Structures, Lecture 17: Succinct Rank, Select, & Tries (cont'd)]] | Fábio H. V. Martinez |
| 10.06.2019 | (Whit Monday) | -- |
| 17.06.2019 | (Aggi Day) | -- |
| 24.06.2019 | [[https://doi.org/10.1101/596718|Influence of neighboring small sequence variants on functional impact prediction]] | Jan-Simon Baasner |
| 01.07.2019 | (Jens away) | -- |
| 08.07.2019 | [[https://arxiv.org/abs/1905.04165|Alignment- and reference-free phylogenomics with colored de-Bruijn graphs]] | Andreas Rempel |

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