====== Genome Informatics Research Seminar (2S) ======
| [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=258093536|392188]] | Stoye | Summer 2021 | Monday 14-16 online |

==== Short Description ====
In this seminar, current research of the Genome Informatics group is reported.

(In dieser Veranstaltung wird in Vorträgen über aktuelle Themen aus der Forschung der Arbeitsgruppe Genominformatik berichtet.)

This class will be given as a live video conference. Details will be distributed to registered participants short before the first class on April 12.

==== Schedule ====
^ **Date** ^ **Topic** ^ **Name** ^
| 12.04.2021 | Organization of the seminar | Jens S |
| 19.04.2021 | Exploiting dynamic machine learning for tissue-specific expression prediction based on regulatory regions | Moritz H |
| 26.04.2021\\ **at 13 c.t.** | CeBiTec Colloquium (13 c.t.): Engineering spatial organization in biomimetic systems | Henrike Niederholtmeyer |
| 03.05.2021 | Alignment-free Phylogenomics Using Amino Acid Sequences | Marco S |
| 10.05.2021 | -- | -- |
| 17.05.2021 | -- | -- |
| 24.05.2021 | (Whit Monday) | -- |
| 31.05.2021\\ **at 15:00**| Error correction of UMI (unique molecular identifier) tagged HTS immune repertoires | Pina K |
| 07.06.2021 | -- | -- |
| 14.06.2021\\ **at 15 c.t.** | phasebook: haplotype-aware de novo assembly of diploid genomes from long reads | Xiao L |
| 21.06.2021\\ **at 15:00** | Parsing the language of genomes using deep transformers | Maren K |
| 28.06.2021\\ **at 15:00** | Strainline: full-length de novo viral haplotype reconstruction from noisy long reads | Xiongbin K |
| 05.07.2021\\ **at 10 s.t. and\\ at 14 c.t.** | **Bachelor Theses GI**\\ morning:\\ Franziska N (Pangenomics: Core Detection),\\ Leonie B (Comparative Genomics: DCJ Distance),\\ Fabian K (Comparative Genomics: Generator Construction)\\ afternoon:\\ Rebecca P (Phylogenomics: k-mer Entropy), \\ Ann-Cathrin G (Phylogenomics: Counting k-mers) ||
| 12.07.2021 | -- | -- |
| 19.07.2021\\ **at 14 c.t.** | Developing a standard interface for sets of //k//-mer sets index structures  | Andreas R |
| 13.09.2021 | The Potential of Family-free Rearrangements Towards Gene Orthology Inference | Marília D V B |

later: Jens S, Sebastian J, Michael B, Leonard B, Tizian Sch