====== Bioinformatics Journal Club (2S) ======
| [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=391465558|392172]] | Stoye | Summer 2023 | Monday 10:15-11:45 | U10-155 |

==== Contents ====
We read and discuss current research articles from different fields in computational biology. The specific topics will be selected at the beginning of the semester.

To get credit points, students have to show proficiency in reading, discussing and presenting original research papers and other scientific literature.

==== Topic ====
To be discussed.

==== Schedule ====
^ **Date** ^ **Topic** ^ **Name** ^
| 03.04.2023 | Organization of the seminar | Jens S |
| 10.04.2023 | -- (Easter Monday) -- | -- |
| 17.04.2023 | [[https://doi.org/10.1093/bioinformatics/btac264 | Qiu and Kingsford: The effect of genome graph expressiveness on the discrepancy between genome graph distance and string set distance]] | everyone |
| 24.04.2023 | [[https://doi.org/10.1093/bioinformatics/bty735 | Lunter: Haplotype matching in large cohorts using the Li and Stephens model]], Sections 1 & 2 | everyone |
| 01.05.2023 | -- (May Day) -- | -- |
| 08.05.2023 | Lunter (cont'd), Section 3.1-3.2 | everyone |
| 15.05.2023 | Lunter (cont'd), Section 3.3ff | everyone |
| 22.05.2023 | Lunter (cont'd), Section 3.3ff | everyone |
| 29.05.2023 | -- (Whit Monday) -- | -- |
| 05.06.2023 | -- (AGGI Day) -- | -- |
| 12.06.2023 | [[https://doi.org/10.1101/542035 | Shchur, Ziganurova and Durbin: Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structures]] | everyone |
| 19.06.2023 | [[https://link.springer.com/chapter/10.1007/978-3-031-29119-7_9 | Zheng et al.: Translation Rate Prediction and Regulatory Motif Discovery with Multi-task Learning]] | everyone |
| 26.06.2023 | -- | -- |
| 03.07.2023 | -- | -- |
| 10.07.2023 | -- | -- |