====== Algorithms in Genome Research ======

|[[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=565899095|392109]]/[[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=565903030|10]] | Stoye, Dias Vieira Braga | Winter 2025/26 | Fr 9:00-10:30 and 10:30-12:00 in U10-146 |

==== Contents ====
This class covers the basic algorithmic techniques used in the computational analysis of genome and post-genome data. This includes algorithms for genomic mapping and assembly, methods for functional genome annotation (gene finding and gene function prediction), algorithms for the analysis of DNA microarrays and mass spectra, methods and models for protein structure prediction, and algorithms for comparative genomics. 

==== Literature ====
The page [[teaching:alggrliterature|AlgGRLiterature]] contains many links to the original literature. 

==== Time table ====

| **Date**   | **Topic** | **Exercises** |
| 17.10.2025 | -- (no class) | -- |
| 24.10.2025 | Overview | -- |
| 31.10.2025 | | -- |
| 07.11.2025 | | -- |
| 14.11.2025 | | -- |
| 21.11.2025 | | -- |
| 28.11.2025 | | -- |
| 05.11.2025 | | -- |
| 12.12.2025 | | -- |
| 19.12.2025 | | -- |
| Winter break |||
| 09.01.2026 | | -- |
| 16.01.2026 | | -- |
| 23.01.2026 | | -- |
| 30.01.2026 | | -- |
| 06.02.2026 | | -- |

==== Examination dates ====
Oral exams will be on ?? February 2026 or later. Please make an appointment with our team assistants [[https://ekvv.uni-bielefeld.de/pers_publ/publ/PersonDetail.jsp?personId=473967687|Nicole Schellenberg]] or [[https://ekvv.uni-bielefeld.de/pers_publ/publ/PersonDetail.jsp?personId=493099163|Verena Uhlig]].

A second oral exam can be taken in March 2026. Please contact one of the team assistants if you are interested.