| 17.10.06 | Preliminaries | ||
| 24.10.06 | Sten Ilmjärv | Introduction to "Prediction of transcription start sites and alternative promoters" |
summary
paper 1 paper 2 |
| 31.10.06 | Katharina Pernhorst | Cohen et al. , Comparative promoter analysis allows de novo identification of specialized cell junction-associated proteins, PNAS 103(15), 5682-5687, 2006. | |
| 07.11.06 | Jens Stoye | Michael et al. , Suboptimal local alignments across multiple scoring schemes, Proceedings of WABI 2004, LNBI 3240, 99-110, 2004. | |
| 14.11.06 | Jan Baumbach | Davuluri et al. , Computational identification of promoters and first exons in the human genome, Nature Genetics 29, 412-417, 2001. | |
| 21.11.06 | --- | ||
| 28.11.06 |
Roland Wittler
Jens Stoye |
Introduction to "Rearrangement medians and gene clusters" |
paper 1
paper 2 |
| 05.12.06 | Leo van Iersel | Caprara, The reversal median problem, INFORM J. Computing 15(1), 93-113, 2003. | |
| 12.12.06 | Søren Besenbacher | Pe'er and Shamir, Approximation algorithms for the permutations median problem in the breakpoint model in comparative genomics, in Sankoff and Nadeau: Comparative Genomics, 225-241, Kluwer Academic Publisher, 2000. | |
| 19.12.06 | Katharina Jahn | Schmidt and Stoye, Quadratic time algorithms for finding common intervals in two and more sequences, Proceedings of CPM 2004, LNCS 3109, 347-358, 2004. | |
| 09.01.07 | Inke Hildebrandt | Bergeron et al. , The algorithmic of gene teams, Proceedings of WABI 2002, LNCS 2452, 464-476, 2002. | |
| 16.01.07 | Tahir Ejaz | Chauve et al. , On common intervals with errors, Technical Report 2006-02, Technische Fakultät der Universität Bielefeld, 2006. | |
| 23.01.07 | Sven Rahmann | Introduction to "Massively parallel DNA sequencing techniques" |
paper 1
paper 2 |
| 30.01.07 | N.N. | Noonan et al. , Sequencing and analysis of Neanderthal genomic DNA, Science 314, 1113-1118, 2006. | |
| 06.02.07 | N.N. | Angly et al. , The marine viromes of four oceanic regions, PLoS Biology 4(11), e368, 2006. |