| 392177 | Wittler, Brink | Summer semester 2014 | Block 18.03.-01.04.2014 - 9-17 Uhr in V6-116 | ekvv |
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.
Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.
| Date | Topic | Who | Solution (for next day) |
| Tue, 18.3. | Shell | – | Malte, Katharina |
| Python | Benedikt | Thomas | |
| Wed, 19.3. | Assembly | Kerstin | Kerstin, Annika |
| De Brujn Graph | Katharina | ||
| Thu, 20.3. | Mapping, SAM/BAM-Format | Thomas | Franzi, Swenja |
| Finishing, PCR/Primer | Franzi | ||
| Fri, 21.3. | Genome Rearrangement | Malte | Tobias, Thomas |
| Gene Families | Mehmood | ||
| Mon, 24.3. | Circos | Mark | Tobias, Annika |
| UniMoG | Annika | ||
| Tue, 25.3. | Gene Prediction | Mark | |
| Wed, 26.3. | G/C Rich Regions | Mark, Malte | |
| HMMs | – | ||
| Thu, 27.3. | Operons, RBSs, TTs | Tobias | Franzi, Swenja |
| Fri, 28.3. | Human Microbiome Project | Swenja | Kerstin, Katharina |
| Mon, 31.3. | Wrap Up | – | – |