392181 | Schulz | Block 12.03.2017-23.03.2017 - 9:30-17:30 Uhr in V6-116 | ekvv |
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.
Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.
Date | Topic | Presentation | Solution (for next day) |
Mon, 12.3. | Shell | Tizian: Introduction to Python | Christina |
Tue, 13.3. | Assembly | Jan: Genome Assembly, de Brujin Graphs | Christina |
Wed, 14.3. | Finishing | Jan: BWA | Maria |
Thu, 15.3. | Genome rearrangements I | Maria: Rearrangement distances | Jan |
Fri, 16.3. | Genome rearrangements II | Maria: Circos tutorial | Yannik |
Mon, 19.3. | Gene Prediction | Yannik: Gene Prediction (software: Glimmer, Prodigal) | Jan |
Tue, 20.3. | Hidden Markov Models (HMMs) | Yannik: HMMs | Yannik |
Wed, 21.3. | Position-Specific Scoring Matrices (PSSMs) | Christina: PSSMs | Maria |
Thu, 22.3. | Metagenomics | Christina: Metagenomics | – |
Fri, 23.3. | Finishing the Circos plot | – | – |
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