| 392181 | Schulz | Block 09.03.2020-20.03.2020 - 9:30-17:30 Uhr in V6-116 | ekvv |
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.
Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.
| Date | Topic | Presentation | Solution (for next day) |
| Mon, 9.3. | Metagenomics | Tizian: Metagenomics | Fabienne |
| Tue, 10.3. | Hi-C Data Analysis | Leonard: Hi-C | Leonard |
| Wed, 11.3. | Haplotype Inference I | Fabienne: WhatsHap | Lukas |
| Thu, 12.3. | Haplotype Inference II | Lukas: Integer Linear Programs | Leonard |
| Fri, 13.3. | Assembly | Leonard: Genome Assembly, de Brujin Graphs | Fabienne |
| Mon, 16.3. | Finishing | Fabienne: BWA | Lukas |
| Tue, 17.3. | Genome rearrangements | Lukas: Rearrangement distances | Fabienne |
| Wed, 18.3. | Hidden Markov Models (HMMs) | Leonard: HMMs | Lukas |
| Thu, 19.3. | Gene Prediction | Lukas: Gene Prediction (software: Glimmer, Prodigal) | Leonard |
| Fri, 20.3. | Finishing the Circos plot | – | – |
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