| 392181 | Schulz | Block 14.03.2022-25.03.2022 - 9:30-17:30 Uhr | ekvv |
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.
Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.
| Date | Topic | Presentation | Solution (for next day) |
| Mon, 14.3. | Shell | Tizian: Introduction to Python | Eric |
| Tue, 15.3. | Assembly | Fabian: Genome Assembly, de Brujin Graphs, Tizian: Crash Course Snakemake | Pia |
| Wed, 16.3. | Finishing | Fabian: BWA | Jamie |
| Thu, 17.3. | Genome rearrangements | Pia: Rearrangement Distances | Fabian |
| Fri, 18.3. | Gene Prediction | Eric: Gene Prediction (Software: Glimmer, Prodigal) | Tim |
| Mon, 21.3. | Hidden Markov Models (HMMs) | Tim: HMMs | Jamie |
| Tue, 22.3. | Position-Specific Scoring Matrices (PSSMs) | Tim: PSSMs | Eric |
| Wed, 23.3. | Haplotype Inference | Jamie: WhatsHap | Jamie |
| Thu, 24.3. | Metagenomics | Pia: Metagenomics | Eric |
| Fri, 25.3. | Finishing the Circos plot | – | – |
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