Practical Course: Bioinformatics Applications in Genome Research

392181 Bohnenkämper Block 16.03.- 27.03. 9:30-17:30

Content

In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.

Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.

Overview

Date Topic Presentation Solution (for next day)
Mon, 16.03. Shell/Snakemake Crash Course
Tue, 17.03. Assembly
Wed, 18.03. Finishing
Thu, 19.03. Gene Prediction
Fri, 20.03. Genome rearrangements
Mon, 23.03. Hidden Markov Models (HMMs)
Tue, 24.03. Haplotype Inference
Wed, 25.03. Metagenomics
Thu, 26.03. Position-Specific Scoring Matrices (PSSMs)
Fri, 27.03. Finishing Up

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