Bielefeld University - AG Genome Informatics

Spectral Clustering of Protein Sequences, Dec. 3rd, 2007, Yoan Diekmann

The first and most important paper to read is the one by Paccanaro et.al.[pdf]. Especially the sections contained in the materials and method part should be read, regarding the algorithm and performance criterion.

The second paper by Brohee and van Helden compares different algorithms and their performance criteria [pdf]. It can be read as an additional reference.