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Advanced algorithmic techniques for Bioinformatics
(V + Ü) (WS07/08)


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Lecture (Vorlesung)

Exercise Sessions (Übungsgruppen)

  • Veranstalter:
    Prof. Dr. Ferdinando Cicalese,
    Dr. Zsuzsanna Lipták

  • Time: Wed 12-14, Place: H16
  • Belegnr. 392128 (V + Ü), Link auf den ekVV
  • Note: This course will be taught in English.
  • Written exams:
    Klausur: Wed 6 Feb 2008 (during the last lecture) in H16
    Nachklausur: Mon 31 March 2008, 10 ct in H16




Course Plan

No. Date Topic Exercise Sheet
1 17/10/2007 Overview, Introduction to Phylogenetics
2 24/10/2007 Short introduction to Graph Theory exercise1.pdf
3 31/10/2007 Phylogenetics: Distance-based methods
4 7/11/2007 Phylogenetics: Perfect Phylogeny exercise2.pdf
5 14/11/2007 Phylogenetics: Small Parsimony
6 21/11/2007 Phylogenetics: Large Parsimony exercise3.pdf
7 28/11/2007 Phylogenetics: Compatibility
NP completeness
8 5/12/2007 Introduction to probabilistic models exercise4.pdf
9 12/12/2007 Markov Chains and Hidden Markov Models
10 19/12/2007 HMMs: Algorithms exercise5.pdf
11 9/1/2008 Introduction to group testing
12 16/1/2008 (Interval) group testing exercise6.pdf
13 23/1/2008 Money Changing Problem exercise7.pdf (corrected version)