Implementation of Algorithms (1Ü)

392041 Bohnenkämper Winter 2023/24 Class hours by appointment

Procedure:

Each participant implements a (simple) algorithm in a programming language of their own choice. Topics will be distributed individually: meet or send email to the organizer, or to a lecturer of any other class in the modules Algorithms in Bioinformatics or Special Algorithmus in Bioinformatics. The focus of the implementation shall be on code readability and optimal asymptotics, which ideally is verified by systematic testing.

The source code and some test data (where applicable) has to be sent to the organizer one week before the final presentation. During the final presentation, every participant runs and explains her/his software in front of everybody. If the result is not satisfactory, a correction can be provided until the end of the semester.

Final presentation:

29.01.2024, 14:15-15:45, U10-146.

Distributed topics:

Topic Name
Maximal Common Intervals (Didier) Pia H.
Neighbor Joining Lennart F.
Nussinov Algorihm Olívia K.
Dijkstra Ismail C.
WOTD Melissa L.
Compression Al-Okaily Niclas
Common Intervals (Bergeron) Wanja
Gotoh Fabian