Algorithms in Genome Research

392109/10 Stoye, Dias Vieira Braga Winter 2025/26 Fr 9:00-10:30 and 10:30-12:00 in U10-146

Contents

This class covers the basic algorithmic techniques used in the computational analysis of genome and post-genome data. This includes algorithms for genomic mapping and assembly, methods for functional genome annotation (gene finding and gene function prediction), algorithms for the analysis of DNA microarrays and mass spectra, methods and models for protein structure prediction, and algorithms for comparative genomics.

Literature

The page AlgGRLiterature contains many links to the original literature.

Time table

Date Topic Exercises
17.10.2025 – (no class)
24.10.2025 Overview
31.10.2025
07.11.2025
14.11.2025
21.11.2025
28.11.2025
05.11.2025
12.12.2025
19.12.2025
Winter break
09.01.2026
16.01.2026
23.01.2026
30.01.2026
06.02.2026

Examination dates

Oral exams will be on ?? February 2026 or later. Please make an appointment with our team assistants Nicole Schellenberg or Verena Uhlig.

A second oral exam can be taken in March 2026. Please contact one of the team assistants if you are interested.