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392181 | Schulz | Block 09.03.2020-20.03.2020 - 9:30-17:30 Uhr in V6-116 | ekvv |
In this course, practical applications and issues in concrete problem statements and handling real data sets will be addressed. The following topics are intended: assembly, scaffolding, annotation, gene prediction, comparative analysis, etc.
Theoretical knowledge of the students shall be supplemented by practical aspects such as setting up and running existing tools, implementing small own tools, pre- and postprocessing, and critical interpretation of results. A continuously enriched visualization of the data and the obtained results will also guide through the course.
Date | Topic | Presentation | Solution (for next day) |
Mon, 9.3. | Metagenomics | Tizian: Metagenomics | |
Tue, 10.3. | Hi-C Data Analysis | TBA: HiCUP | |
Wed, 11.3. | Haplotyping | TBA: WhatsHap | |
Thu, 12.3. | Perfect Phylogeny Haplotyping | TBA: Integer Linear Programs | |
Fri, 13.3. | Assembly | TBA: Genome Assembly, de Brujin Graphs | |
Mon, 16.3. | Finishing | TBA: BWA | |
Tue, 17.3. | Genome rearrangements | TBA: Rearrangement distances | |
Wed, 18.3. | Hidden Markov Models (HMMs) | TBA: HMMs | |
Thu, 19.3. | Gene Prediction | TBA: Gene Prediction (software: Glimmer, Prodigal) | |
Fri, 20.3. | Finishing the Circos plot | – | – |
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