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teaching:2020summer:compan [2020/06/10 11:57] tischulz Added slides and link to latex beamer doku |
teaching:2020summer:compan [2020/07/06 11:52] (current) tischulz Removed Yannick from schedule |
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| 2 | Tizian | {{ :teaching:2020summer:compan:bbw089.pdf | Computational pan-genomics: status, promises and challenges }} | | | 2 | Tizian | {{ :teaching:2020summer:compan:bbw089.pdf | Computational pan-genomics: status, promises and challenges }} | | ||
| | | [[ https://almob.biomedcentral.com/track/pdf/10.1186/s13015-016-0066-8 | Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage ]] | | | | | [[ https://almob.biomedcentral.com/track/pdf/10.1186/s13015-016-0066-8 | Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage ]] | | ||
- | | 3 | Yannick | [[ https://www.biorxiv.org/content/10.1101/695338v2.full.pdf | Bifrost - Highly parallel construction and indexing of colored and compacted de Bruijn graphs ]] | | + | | 3 | <del>Yannick</del> | [[ https://www.biorxiv.org/content/10.1101/695338v2.full.pdf | Bifrost - Highly parallel construction and indexing of colored and compacted de Bruijn graphs ]] | |
| 3 | Marvin | [[ https://www.biorxiv.org/content/10.1101/234856v1.full.pdf | Sequence variation aware genome references and read mapping with the variation graph toolkit ]] | | | 3 | Marvin | [[ https://www.biorxiv.org/content/10.1101/234856v1.full.pdf | Sequence variation aware genome references and read mapping with the variation graph toolkit ]] | | ||
| 4 | Fabian | [[ https://www.liebertpub.com/doi/pdfplus/10.1089/cmb.2019.0309 | Efficient Construction of a Complete Index for Pan-Genomics Read Alignment ]] | | | 4 | Fabian | [[ https://www.liebertpub.com/doi/pdfplus/10.1089/cmb.2019.0309 | Efficient Construction of a Complete Index for Pan-Genomics Read Alignment ]] | |