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teaching:2020winter:cg [2021/01/20 22:47] mbraga [Schedule] |
teaching:2020winter:cg [2021/02/11 12:16] (current) mbraga [Schedule] |
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| 07.01. | Capped relational graph | {{teaching:2020winter:cg:cg09.pdf | S09}} | {{teaching:2020winter:cg:cg09-notes.pdf | SN09}} | [[https://doi.org/10.1089/cmb.2020.0434|Bohnenkämper et al. 2020]] | {{teaching:2020winter:cg:sheet09.pdf | Ex09}} | | | 07.01. | Capped relational graph | {{teaching:2020winter:cg:cg09.pdf | S09}} | {{teaching:2020winter:cg:cg09-notes.pdf | SN09}} | [[https://doi.org/10.1089/cmb.2020.0434|Bohnenkämper et al. 2020]] | {{teaching:2020winter:cg:sheet09.pdf | Ex09}} | | ||
| 14.01. | DCJ with duplicated genes (double-distance / balanced genomes) | {{teaching:2020winter:cg:cg10.pdf | S10}} | {{teaching:2020winter:cg:cg10-notes.pdf | SN10}} | [[https://doi.org/10.1186/1471-2105-10-120|Tannier et al. 2009]] | {{teaching:2020winter:cg:sheet10.pdf | Ex10}} | | | 14.01. | DCJ with duplicated genes (double-distance / balanced genomes) | {{teaching:2020winter:cg:cg10.pdf | S10}} | {{teaching:2020winter:cg:cg10-notes.pdf | SN10}} | [[https://doi.org/10.1186/1471-2105-10-120|Tannier et al. 2009]] | {{teaching:2020winter:cg:sheet10.pdf | Ex10}} | | ||
- | | 21.01. | ILP / DCJ distance of balanced genomes | {{teaching:2020winter:cg:cg11.pdf | S11}} | | [[https://doi.org/10.1089/cmb.2014.0096|Shao et al. 2015]] | | | + | | 21.01. | ILP / DCJ distance of balanced genomes | {{teaching:2020winter:cg:cg11.pdf | S11}} | {{teaching:2020winter:cg:cg11-notes.pdf | SN11}} | [[https://doi.org/10.1089/cmb.2014.0096|Shao et al. 2015]] | {{teaching:2020winter:cg:sheet11.pdf | Ex11}} | |
- | | 28.01. | DCJ-indel distance of natural genomes | | | [[https://doi.org/10.1089/cmb.2020.0434|Bohnenkämper et al. 2020]] | | | + | | 28.01. | DCJ-indel distance of natural genomes\\ (guest lecture by L. Bohnenkämper) | {{teaching:2020winter:cg:cg12.pdf | S12}} | --- | [[https://doi.org/10.1089/cmb.2020.0434|Bohnenkämper et al. 2020]] | {{teaching:2020winter:cg:sheet12.pdf | Ex12}} | |
- | | 04.02. | DCJ-indel distance of family-free genomes | | | [[https://doi.org/10.4230/LIPIcs.WABI.2020.3|Rubert et al. 2020]] | | | + | | 04.02. | DCJ distance and DCJ-indel distance\\ of family-free genomes | {{teaching:2020winter:cg:cg13.pdf | S13}} | {{teaching:2020winter:cg:cg13-notes.pdf | SN13}} | [[https://doi.org/10.4230/LIPIcs.WABI.2020.3|Rubert et al. 2020]] | {{teaching:2020winter:cg:sheet13.pdf | Ex13}} | |
- | | 11.02. | t.b.a. | | | | | | + | | 11.02. | Small parsimony under SCJ / review | {{teaching:2020winter:cg:cg14.pdf | S14}} | {{teaching:2020winter:cg:cg14-notes.pdf | SN14}} | [[https://doi.org/10.1109/TCBB.2011.34|Feijão & Meidanis 2011]] | --- | |