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teaching:2024summer:cg [2024/05/06 15:07]
leonard [Schedule]
teaching:2024summer:cg [2024/05/06 15:10]
leonard
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 | 07.06. | Leonard | DCJ-indel distance | [[https://​doi.org/​10.1089/​cmb.2011.0118|Braga et al. 2011]]\\ [[https://​doi.org/​10.1186/​1748-7188-8-6|Compeau 2013]]\\ [[https://​doi.org/​10.1186/​s13015-024-00253-7|Bohnenkämper 2024]]\\ (ignore ILP section)| | | 07.06. | Leonard | DCJ-indel distance | [[https://​doi.org/​10.1089/​cmb.2011.0118|Braga et al. 2011]]\\ [[https://​doi.org/​10.1186/​1748-7188-8-6|Compeau 2013]]\\ [[https://​doi.org/​10.1186/​s13015-024-00253-7|Bohnenkämper 2024]]\\ (ignore ILP section)| |
 | 14.06. | Roland | Consistency of gene clusters | {{teaching:​2023summer:​cg:​consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://​doi.org/​10.1109/​TCBB.2008.135|Stoye et al. 2009]],\\ [[https://​doi.org/​10.1089/​cmb.2011.0083|Wittler et al. 2011]] |  | | 14.06. | Roland | Consistency of gene clusters | {{teaching:​2023summer:​cg:​consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://​doi.org/​10.1109/​TCBB.2008.135|Stoye et al. 2009]],\\ [[https://​doi.org/​10.1089/​cmb.2011.0083|Wittler et al. 2011]] |  |
-| 21.06. | Leonard | Rearrangement problems on natural genomes |   |+| 21.06. | Leonard | Rearrangement problems on natural genomes ​| [[https://​doi.org/​10.1089/​cmb.2014.0096|Shao,​ Lin & Moret, 2015]]\\ [[https://​doi.org/​10.1186/​s13015-024-00253-7|Bohnenkämper 2024]]|   |
 | 28.06. | Roland | Generators for common intervals | [[https://​doi.org/​10.1137/​060651331|Bergeron et al. 2008]], Sections 1 and 2 |  | | 28.06. | Roland | Generators for common intervals | [[https://​doi.org/​10.1137/​060651331|Bergeron et al. 2008]], Sections 1 and 2 |  |
 | 05.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 |  | | 05.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 |  |
 | 12.07. | Roland | Common intervals of strings | [[https://​doi.org/​10.1016/​j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:​2023summer:​cg:​didier.pdf | Dany Doerr'​s notes}} | | | 12.07. | Roland | Common intervals of strings | [[https://​doi.org/​10.1016/​j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:​2023summer:​cg:​didier.pdf | Dany Doerr'​s notes}} | |
 | 19.07. | Roland | Common intervals of indeterminate strings | [[https://​pub.uni-bielefeld.de/​download/​2902049/​2902050/​PhDThesis.pdf|Doerr,​ PhD thesis 2016]] | | | 19.07. | Roland | Common intervals of indeterminate strings | [[https://​pub.uni-bielefeld.de/​download/​2902049/​2902050/​PhDThesis.pdf|Doerr,​ PhD thesis 2016]] | |