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teaching:2024winter:algbi [2024/09/16 13:13] – lucasteaching:2024winter:algbi [2024/12/09 13:23] (current) – [Schedule] lucas
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 Topics include, but are not limited to, stringology in bioinformatics, sequence analysis, breakpoint distances, and other topics the participants find interesting. Topics include, but are not limited to, stringology in bioinformatics, sequence analysis, breakpoint distances, and other topics the participants find interesting.
  
 +===== Deadlines =====
 +
 +  * The written summary is to be handed in **at most two weeks** after the presentation.
 +  * If you are unsure whether your presentation fits the format, you should make an appointment with me //approximately one week// before the presentation.
 +  * You can do your "practical implementation" presentation the same week you do your presentation on the algorithm or during the last seminar.
 ===== Schedule ===== ===== Schedule =====
 | **Date** | **Topic**  | **Presenting** | | **Date** | **Topic**  | **Presenting** |
-| 2024-10-07 | Introduction/Organizational matters/Topic selection | Kassian&Leonard | +| 2024-10-07 | Introduction/Organizational matters/Topic selection |  |
-| 2024-10-14 | | | +
-| 2024-10-14 | | | +
-| 2024-10-14 | | |+
 | 2024-10-14 | | | | 2024-10-14 | | |
 +| 2024-10-21 | | |
 +| 2024-10-28 | <del>kmer counting</del> | <del>Fabian Molls</del> |
 +| 2024-11-04 | Phylogenetics: Maximum likelihood | Mathis Wuelperm |
 +| 2024-11-11 | Genome r. | Daniel Prib |
 +| 2024-11-18 | <del>Haplotype matching</del> | <del>Wictoria</del> |
 +| 2024-11-25 | Compression | Jasper M. |
 +| 2024-12-02 | <del>suffix arrays</del> | <del>Evelin Lanert</del> |
 +| 2024-12-09 | Blast | Joyce Abigail Funk |
 +| 2024-12-16 | <del>suffix trees</del> | <del>Igor Kösling</del> |
 +| 2024-12-23 | holidays | |
 +| 2024-12-30 | holidays | |
 +| 2025-01-06 | holidays | |
 +| 2025-01-13 | suffix arrays | Evelin Lanert |
 +| 2025-01-20 | suffix trees | Igor Kösling |
 +| 2025-01-27 | algo presentations  | |
 +
 +===== Literature =====
 +| k-mer counting | [[https://doi.org/10.1093/bioinformatics/btv022 | Deorowicz et al.]] |
 +| Phylogenetics: Neighbor-Joining | [[https://doi.org/10.1093/oxfordjournals.molbev.a040454 | Saitou & Nei]] |
 +| Genome rearrangement | [[https://doi.org/10.1007/11851561_16 | Bergeron et al.]] |
 +| Haplotype matching: PBWT | [[https://doi.org/10.1093/bioinformatics/btu014 | Durbin]] |
 +| Compression | [[https://doi.org/10.1089/cmb.2016.0151 | Al-Okaily et al.]] |
 +| Suffix ararys | [[https://doi.org/10.1137/0222058 | Manber & Myers]] |
 +| BLAST | [[https://doi.org/10.1016/S0022-2836(05)80360-2 | Altschul et al.]] |
 +| Barcoding | [[https://doi.org/10.1098/rspb.2002.2218 | Herbert et al.]] |
teaching/2024winter/algbi.1726492381.txt.gz · Last modified: by lucas
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