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--- teaching:2025summer:kmer_algbioinf [2025/04/16 13:23]
rwittler
+++ teaching:2025summer:kmer_algbioinf [2025/06/17 09:05] (current)
rwittler [Timetable]
@@ Line 62: / Line 62: @@
 | 07.05. | Pseudocode vorstellen |
 | 14.05. | KMC 3: counting and manipulating //k//-mer statistics | Kathrin |
-|            | Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer | Liliana |
 | 21.05. | k-mer counting challenge | (fast) alle |
 | 28.05. | -- |
-| 04.05. | Fast gapped //k//-mer counting with subdivided multi-way bucketed Cuckoo hash table | Sofie  |
+| 04.06. | Fast gapped //k//-mer counting with subdivided multi-way bucketed Cuckoo hash table | Sofie  |
-| 11.06. | Velvet: algorithms for de novo short read assembly using de Bruijn graphs | Simon |
+|            | Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer | Liliana |
+| 11.06. | Sparse and skew hashing of K-mers | Alena |
 | 18.06. | Space-efficient and exact de Bruijn graph representation based on a Bloom filter. (Minia) | Max |
-|            | Minimap2: pairwise alignment for nucleotide sequences | Igor |
+| 25.06. | Minimap2: pairwise alignment for nucleotide sequences | Igor |
-| 25.06. | Revisiting pangenome openness with k-mers | Mathis |
+|             | Revisiting pangenome openness with k-mers | Mathis |
 | 02.07. | -- |
 | 09.07. | |

Genome Informatics