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This shows you the differences between two versions of the page.

--- teaching:2026summer:cg [2026/06/12 13:36]
mbraga [Schedule]
+++ teaching:2026summer:cg [2026/07/24 12:27] (current)
rwittler [Schedule]
@@ Line 67: / Line 67: @@
 | 01.05. | -- (national holiday) ||||
 | 08.05. | Roland | Small Parsimony under SCJ | [[https://ieeexplore.ieee.org/document/5719602|Feijão & Meidanis 2011]],\\ {{teaching:2026summer:cg:fitch.pdf | fitch.pdf}}   | {{teaching:2026summer:cg:sheet03.pdf | Sheet 03}} |
-| 15.05. | Roland | Small Parsimony under SCJ | [[https://doi.org/10.1186/1471-2105-13-S19-S11|Manuch et al. 2012]],\\ [[https://doi.org/10.1109/TCBB.2018.2816034| Luhmann et al. 2014/2018]],\\ {{teaching:2023summer:cg:max-row_c1p.pdf|MAX-ROW_C1P.pdf}}|  {{teaching:2026summer:cg:sheet04.pdf | Sheet 04}} |
+| 15.05. | Roland | Small Parsimony under SCJ | [[https://doi.org/10.1186/1471-2105-13-S19-S11|Manuch et al. 2012]],\\ [[https://doi.org/10.1109/TCBB.2018.2816034| Luhmann et al. 2014/2018]],\\ {{teaching:2023summer:cg:max-row_c1p.pdf|MAX-ROW_C1P.pdf}}| {{teaching:2026summer:cg:sheet04.pdf | Sheet 04}} |
 | 22.05. | Marilia | Double-Cut-and-Join (DCJ) model | [[https://doi.org/10.1007/11851561_16|Bergeron et al. 2006]] | {{teaching:2026summer:cg:sheet05.pdf | Sheet 05}} |
 | 29.05. | Marilia | Restricted DCJ sorting,\\ DCJ halving | {{:teaching:2025summer:cg:restrictedDCJmodel.pdf|Restricted DCJ}}, [[https://www.liebertpub.com/doi/10.1089/cmb.2011.0116|Kovac et al.]],\\ [[https://link.springer.com/chapter/10.1007/978-3-540-69733-6_28|Mixtacki]] | {{teaching:2026summer:cg:sheet06.pdf | Sheet 06}} |
 | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet07.pdf | Sheet 07}} |
-| 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | |
+| 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet08.pdf | Sheet 08}} |
-| 19.06. | Marilia | DCJ-indel distance\\ (maybe also a bit of distances of non-singular genomes with DCJ) | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | |
+| 19.06. | Marilia | DCJ-indel distance | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | {{teaching:2026summer:cg:sheet09.pdf | Sheet 09}} |
-| 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}|  |
+| 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| {{teaching:2026summer:cg:sheet10.pdf | Sheet 10}} |
-| 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | |
+| 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | {{teaching:2026summer:cg:sheet11.pdf | Sheet 11}} |
-| 10.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 |  |
+| 10.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 | {{teaching:2026summer:cg:sheet12.pdf | Sheet 12}}  |
-| 07.07. | Roland | Common intervals of strings | [[https://doi.org/10.1016/j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:2023summer:cg:didier.pdf | Dany Doerr's notes}} |  |
+| 17.07. | Roland | Common intervals of strings | [[https://doi.org/10.1016/j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:2023summer:cg:didier.pdf | Dany Doerr's notes}} | {{teaching:2026summer:cg:sheet13.pdf | Sheet 13}}  |
-| 17.07. | Roland | Common intervals of indeterminate strings | [[https://pub.uni-bielefeld.de/download/2902049/2902050/PhDThesis.pdf|Doerr, PhD thesis 2016]] | |
+| 24.07. | Roland | Common intervals of indeterminate strings | [[https://pub.uni-bielefeld.de/download/2902049/2902050/PhDThesis.pdf|Doerr, PhD thesis 2016]],\\  {{teaching:2026summer:cg:ff.pdf | slides}} |   |

Genome Informatics

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