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--- teaching:2026summer:cg [2026/06/12 18:51]
mbraga [Schedule]
+++ teaching:2026summer:cg [2026/07/24 12:27] (current)
rwittler [Schedule]
@@ Line 72: / Line 72: @@
 | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet07.pdf | Sheet 07}} |
 | 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet08.pdf | Sheet 08}} |
-| 19.06. | Marilia | DCJ-indel distance\\ (maybe also a bit of distances of non-singular genomes with DCJ) | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | |
+| 19.06. | Marilia | DCJ-indel distance | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | {{teaching:2026summer:cg:sheet09.pdf | Sheet 09}} |
-| 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}|  |
+| 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| {{teaching:2026summer:cg:sheet10.pdf | Sheet 10}} |
-| 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | |
+| 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | {{teaching:2026summer:cg:sheet11.pdf | Sheet 11}} |
-| 10.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 |  |
+| 10.07. | Roland | Generators, strong common intervals and PQ-trees | see above, Sections 3, 4, 5.1, and 5.3 | {{teaching:2026summer:cg:sheet12.pdf | Sheet 12}}  |
-| 07.07. | Roland | Common intervals of strings | [[https://doi.org/10.1016/j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:2023summer:cg:didier.pdf | Dany Doerr's notes}} |  |
+| 17.07. | Roland | Common intervals of strings | [[https://doi.org/10.1016/j.jda.2006.03.021|Didier at al., 2006]],\\ {{teaching:2023summer:cg:didier.pdf | Dany Doerr's notes}} | {{teaching:2026summer:cg:sheet13.pdf | Sheet 13}}  |
-| 17.07. | Roland | Common intervals of indeterminate strings | [[https://pub.uni-bielefeld.de/download/2902049/2902050/PhDThesis.pdf|Doerr, PhD thesis 2016]] | |
+| 24.07. | Roland | Common intervals of indeterminate strings | [[https://pub.uni-bielefeld.de/download/2902049/2902050/PhDThesis.pdf|Doerr, PhD thesis 2016]],\\  {{teaching:2026summer:cg:ff.pdf | slides}} |   |

Genome Informatics

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