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teaching:2026summer:cg [2026/06/12 18:51] mbraga [Schedule] |
teaching:2026summer:cg [2026/06/19 16:43] (current) mbraga [Schedule] |
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| | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet07.pdf | Sheet 07}} | | | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet07.pdf | Sheet 07}} | | ||
| | 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet08.pdf | Sheet 08}} | | | 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://doi.org/10.1145/300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://academic.oup.com/book/52874/chapter-abstract/421908746|Bergeron et al. 2005]] | {{teaching:2026summer:cg:sheet08.pdf | Sheet 08}} | | ||
| - | | 19.06. | Marilia | DCJ-indel distance\\ (maybe also a bit of distances of non-singular genomes with DCJ) | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | | | + | | 19.06. | Marilia | DCJ-indel distance | [[https://doi.org/10.1089/cmb.2011.0118|Braga et al. 2011]] | {{teaching:2026summer:cg:sheet09.pdf | Sheet 09}} | |
| | 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| | | | 26.06. | Roland | Consistency of gene clusters | {{teaching:2023summer:cg:consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://doi.org/10.1109/TCBB.2008.135|Stoye et al. 2009]],\\ [[https://doi.org/10.1089/cmb.2011.0083|Wittler et al. 2011]],\\ {{https://n-coder.github.io/pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| | | ||
| | 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | | | | 03.07. | Roland | Generators for common intervals | [[https://doi.org/10.1137/060651331|Bergeron et al. 2008]], Sections 1 and 2 | | | ||