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teaching:2026summer:cg [2026/06/12 18:51]
mbraga [Schedule]
teaching:2026summer:cg [2026/06/19 16:43] (current)
mbraga [Schedule]
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 | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://​doi.org/​10.1145/​300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://​academic.oup.com/​book/​52874/​chapter-abstract/​421908746|Bergeron et al. 2005]] | {{teaching:​2026summer:​cg:​sheet07.pdf | Sheet 07}} | | 05.06. | Marilia | Inversion distance of circular chromosomes | [[https://​doi.org/​10.1145/​300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://​academic.oup.com/​book/​52874/​chapter-abstract/​421908746|Bergeron et al. 2005]] | {{teaching:​2026summer:​cg:​sheet07.pdf | Sheet 07}} |
 | 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://​doi.org/​10.1145/​300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://​academic.oup.com/​book/​52874/​chapter-abstract/​421908746|Bergeron et al. 2005]] | {{teaching:​2026summer:​cg:​sheet08.pdf | Sheet 08}} | | 12.06. | Marilia | Inversion distance (cont.),\\ Inversion sorting | [[https://​doi.org/​10.1145/​300515.300516|Hannenhalli and Pevzner 1999]],\\ [[https://​academic.oup.com/​book/​52874/​chapter-abstract/​421908746|Bergeron et al. 2005]] | {{teaching:​2026summer:​cg:​sheet08.pdf | Sheet 08}} |
-| 19.06. | Marilia | DCJ-indel distance\\ (maybe also a bit of distances of non-singular genomes with DCJ) | [[https://​doi.org/​10.1089/​cmb.2011.0118|Braga et al. 2011]] | |+| 19.06. | Marilia | DCJ-indel distance | [[https://​doi.org/​10.1089/​cmb.2011.0118|Braga et al. 2011]] | {{teaching:​2026summer:​cg:​sheet09.pdf | Sheet 09}} |
 | 26.06. | Roland | Consistency of gene clusters | {{teaching:​2023summer:​cg:​consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://​doi.org/​10.1109/​TCBB.2008.135|Stoye et al. 2009]],\\ [[https://​doi.org/​10.1089/​cmb.2011.0083|Wittler et al. 2011]],\\ {{https://​n-coder.github.io/​pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| ​ | | 26.06. | Roland | Consistency of gene clusters | {{teaching:​2023summer:​cg:​consistent_gene_clusters_slides.pdf | Slides}},\\ [[https://​doi.org/​10.1109/​TCBB.2008.135|Stoye et al. 2009]],\\ [[https://​doi.org/​10.1089/​cmb.2011.0083|Wittler et al. 2011]],\\ {{https://​n-coder.github.io/​pqtree.js|PQ- & PC-Trees applet, D. Peters and S. D. Fink}}| ​ |
 | 03.07. | Roland | Generators for common intervals | [[https://​doi.org/​10.1137/​060651331|Bergeron et al. 2008]], Sections 1 and 2 | | | 03.07. | Roland | Generators for common intervals | [[https://​doi.org/​10.1137/​060651331|Bergeron et al. 2008]], Sections 1 and 2 | |