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teaching:alggrliterature [2022/11/21 09:57]
jstoye [Genome assembly IIb: Hybrid/long read assembly] 		teaching:alggrliterature [2025/11/27 09:08] (current)
jstoye [Transcriptomics I: mRNA analysis, RNA-Seq]
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 |Splicing graphs and EST assembly problem]]. //​Bioinformatics//​ **18**(Suppl. 1):​S181-S188,​ 2002.  |Splicing graphs and EST assembly problem]]. //​Bioinformatics//​ **18**(Suppl. 1):​S181-S188,​ 2002. 
   - M. Sammeth, S. Foissac, R. Guigó. [[https://​doi.org/​10.1371/​journal.pcbi.1000147|A general definition and nomenclature for alternative splicing events]]. //PLoS Comput. Biol.// **4**(8):​e1000147,​ 2008.    - M. Sammeth, S. Foissac, R. Guigó. [[https://​doi.org/​10.1371/​journal.pcbi.1000147|A general definition and nomenclature for alternative splicing events]]. //PLoS Comput. Biol.// **4**(8):​e1000147,​ 2008. 
-  - V. Lacroix, M. Sammeth, R. Guigó, A. Bergeron. [[https://​doi.org/​10.1007/​978-3-540-87361-7_5|Exact Transcriptome Reconstruction from Short Sequence reads]]. Proc. WABi 2008, LNBI 5251, 50-63, 2008. +  - V. Lacroix, M. Sammeth, R. Guigó, A. Bergeron. [[https://​doi.org/​10.1007/​978-3-540-87361-7_5|Exact Transcriptome Reconstruction from Short Sequence reads]]. Proc. WABI 2008, LNBI 5251, 50-63, 2008. 
  
 Very good review about NGS transcriptomics (RNA-seq): ​ Very good review about NGS transcriptomics (RNA-seq): ​