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--- thesistopics [2022/06/29 07:02]
jstoye [Medical Bioinformatics Projects in Australia (Master)]
+++ thesistopics [2026/07/19 18:41] (current)
jstoye
@@ Line 5: / Line 5: @@
 </WRAP>
+===== <TITLE> (Bachelor/Master) =====
-===== Improvement of Sequence-to-Graph Alignment (Bachelor) =====
+<Project description>
-[[https://ekvv.uni-bielefeld.de/pers_publ/publ/PersonDetail.jsp?personId=70863414|Tizian Schulz]] //(Please also refer to the project page: [[https://gitlab.ub.uni-bielefeld.de/gi/plast|PLAST]])//
-PLAST is a new heuristic method to find maximum scoring local alignments of a DNA query sequence to a pangenome represented as a compacted colored de Bruijn graph. The first method has been published [[https://doi.org/10.1093/bioinformatics/btab077|here]], but there exist various ideas how to improve the method. Some are well suited for a Bachelor thesis. Contact Tizian for details.

Genome Informatics