Arbeitsgruppenseminar Genominformatik Sommersemester 2008

392188

Hoffmann, Stoye

Summer 2008

Thursday 16-18 in U10-146

Course Description

In this seminar, current topics of the Genome Informatics research group are presented.

(In dieser Veranstaltung wird in Vorträgen über aktuelle Themen aus der Forschung der Arbeitsgruppe Genominformatik berichtet.)

Schedule

Date	Name	Topic
April 10th, 2008	Janna Berkemann, Péter Erdõs	Bachelor thesis kickoff: …, New developments in the mathematics of phylogeny
April 24th, 2008	Wolfgang Gerlach, Nils Hoffmann	BREW 2008 rehearsal: Taxonomical and Functional Characterization of Ultra-Short Reads from Microbial Metagenomes using the q-Gram Index, BREW 2008 rehearsal: Dynamic Time Warping in Chromatography Mass-Spectrometry
April 30th, 2008	Johannes Linnemann	Diploma thesis presentation: Robustness of genomes under inversion
May 8th, 2008	Roland Wittler	Jurassic Genomics
May 15th, 2008	Alexander Bunkowski, Sita Lange	Visualization, Alignment and Data Mining for MCC/IMS Signals, Master thesis presentation: FORCE2 - A Weighted Graph Cluster Editing Tool using Layout-Based Heuristics
May 29th, 2008	Julia Zakotnik	CPM 2008 rehearsal: HP Distance via Double Cut and Join Distance, COCOON 2008 rehearsal: Genome Halving under DCJ revisited
June 5th, 2008	Gero Doose, Phillip Torkler, Sören Müller	Bachelor thesis presentation: …
June 12th, 2008	Epameinondas, Fritzilas, Jose, Amgarten, Quitzau	COCOON 2008 rehearsal: Structural Identifiability in Low-Rank Matrix Factorization, WABI 2008 rehearsal: Detecting Repeat Families in Incompletely Sequenced Genoes
June 26th, 2008	Jan Baumbach	IB08 rehearsal: MoRAine - A web server for fast computational transcription factor binding motif re-annotation
July 3rd, 2008	Kai Engelmann, Yoan Diekmann	Bachelor thesis kickoff: Mure-Cola - Multiple Reference Contig Layout, Diploma thesis presentation: An Algorithm for Approximate Gene Cluster Detection
July 10th, 2008	Léon Kuchenbecker, Peter Husemann	Bachelor thesis kickoff: Center Gene Clusters, Contig Mapping using a q-Gram Index
July 15th, 2008, 11:15	Wolfgang Gerlach	ISMB SHORT-SIG Rehearsal: Taxonomical and Functional Characterization of Ultra-Short Reads From Microbial Metagenomes and Examination of Mate-Pairs
July 17th, 2008	Sebastian Oehm, Martin Riese	Comparative metabolic pathway analysis, Bachelor thesis presentation: …
July 31st, 2008	Marcin Kaminski	The game of Cops and Robber on graphs
August 7th, 2008	Martin Milanic	MFCS Rehearsal: The Maximum Independent Set Problem in Planar Graphs
September 25th, 2008	Patrick Schwientek	Master thesis presentation: Genome scale expression analysis of left ventricular assist devices (VAD) pre and post mechanical unloading