Arbeitsgruppenseminar Genominformatik

392188

Husemann, Stoye

Winter 2010

Thursday 16-18 in U10-146

Course Description

In this seminar, current topics of the Genome Informatics research group are presented.

(In dieser Veranstaltung wird in Vorträgen über aktuelle Themen aus der Forschung der Arbeitsgruppe Genominformatik berichtet.)

Schedule

Date	Topic	Name
07.10.2010	The Consecutive-Ones Property Problem as a Model for Inferring Ancestral Genomes	Murray Patterson
14.10.2010	Organization, Rehersal “Sequence comparison in bioinformatics”	Peter Husemann
21.10.2010\\at 14:15	Nested Tandem Repeats - Computation and Analysis\\Approximate Graph Products	Atheer Matroud\\Marc Hellmuth
28.10.2010	AGGI Cave Tour	—
04.11.2010	Fast and Accurate Peak-Finding in GCxGC-MS Data	Nils Hoffmann
11.11.2010	—	—
18.11.2010	repfish: Detangeling of Repetetive Contigs in Procaryotic Shotgun Sequencing Projects	Patrick Schwientek
25.11.2010	Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions	Daniel Doerr (Master project presentation)
02.12.2010	Reconstruction and Comparison of Cell Lineages	Pina Krell
09.12.2010	Extracting Somatic Deletions from a Contaminated Tumor Sample	Roland Wittler
16.12.2010	Elucidating posttranscriptional gene regulation using PAR-CLIP	Jessica Spitzer (Department of Paediatric Oncology, Haematology and Immunology, Düsseldorf)
23.12.2010	—	—
06.01.2011	—	—
13.01.2011	t.b.a.	Project presentation: Konstantin Otte; Bachelor presentation: Christian Miele and Annica Seidel
20.01.2011	Analyzing de novo transcriptome assemblers using simulated 454 reads	Marvin Mundry (Institute for Evolution and Biodiversity, Münster)
27.01.2011	—	—
03.02.2011	Taxonomic classification of unassembled metagenomic shotgun and 16S-rDNA sequencing reads with CARMA3	Wolfgang Gerlach
10.02.2011	—
17.02.2011	Julia Mixtacki revisited	Péter Erdõs, Jens Stoye
24.02.2011	IfB Retreat	—
03.03.2011	Group testing	Harout Aydinian, Christian Deppe
10.03.2011	—	—
17.03.2011	Periodic subgraphs in dynamic networks	Péter Erdõs