392169 | Stoye, Dörr | Winter 2011/12 | Thursday 18-20 in U10-146 | ekvv |
We read and discuss current research articles from different fields in computational biology.
Date | Topic | Name | Article |
13.10.2011 | Preliminaries | Jens Stoye | — |
20.10.2011 | — | — | Jens in Berlin |
27.10.2011 | — | — | Jens in Aarhus |
03.11.2011 | Local alignment | Eyla Willing | B. Kehr, D. Weese, K. Reinert (2011) STELLAR: fast and exact local alignments. BMC Bioinformatics 12(Suppl 9):S15. |
10.11.2011 | Metagenomics | Christina Ander | C. Martin, N.N. Diaz, J. Ontrup, T.W. Nattkemper (2008) Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24(14):1568-1574. |
17.11.2011 | Petri nets | Linda Sundermann | S. Janowski et al. (2010) Modeling of cell-to-cell communication processes with Petri nets using the example of quorum sensing. In Silico Biology 10, 0003. |
24.11.2011 | RNA shapes | Nina Luhmann | S. Janssen, R. Giegerich (2010) Faster computation of exact RNA shape probabilities. Bioinformatics 26(5):632-639. |
01.12.2011 | Data structures | everybody | Christmas and other trees |
08.12.2011 | Population genetics | Daniel Dörr | E. Baake, I. Herms (2008) Single-Crossover Dynamics: Finite versus Infinite Populations. Bulletin of Mathematical Biology 70:603–624. |
15.12.2011 | Social events | CLIB & Fachschaft | More trees and fluids |
22.12.2011 | PPT | everybody | How not to give a talk |
29.12.2011 | — | — | christmas break |
05.01.2011 | — | — | christmas break |
12.01.2011 | Split decomposition | Roland Wittler | H.-J. Bandelt, A.W.M. Dress (1992) Split decomposition: A new and useful approach to phylogenetic analysis of distance data. Mol. Phylogenet. Evol. 1(3):242–252. |
19.01.2011 | — | — | Jens in Paris |
26.01.2011 | — | — | SequenceWorkshop2012 |
02.02.2011 | BWT | Jens Stoye | M. J. Bauer, A. J. Cox, G. Rosone (2011) Lightweight BWT Construction for Very Large String Collections. Proc. of CPM 2011, LNCS 6661, 219-231. |