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Algorithms in Genome Research

392109/10 Stoye Fr 8:45-10:15/Fr 10:15-11:45 in U10-146


This class covers the basic algorithmic techniques used in the computational analysis of genome and post-genome data. This includes algorithms for genomic mapping and assembly, methods for functional genome annotation (gene finding and gene function prediction), algorithms for the analysis of DNA microarrays and mass spectra, methods and models for protein structure prediction, and algorithms for comparative genomics.


The page AlgGRLiterature contains many links to the original literature.

Time table

Date Topic Exercises
21.10.2016 Introduction, logistics
28.10.2016 Physical mapping Exercises 1
04.11.2016 Genome assembly I,II,III Exercises 2
11.11.2016 Genome assembly IV Exercises 3
18.11.2016 (no class)
25.11.2016 (no class)
02.12.2016 (no class)
09.12.2016 Phylogenetic footprinting Exercises 4
16.12.2016 RNA-seq Exercises 5
23.12.2016 RNomics Exercises 6
30.12.2016 (no class)
06.01.2017 (no class)
13.01.2017 Proteomics: Analysis of mass spectra Exercises 7
20.01.2017 Comparative genomics: detection of gene clusters Exercises 8
27.01.2017 (no class for health reasons)
03.02.2017 Gene clusters part 2 (by Daniel Dörr) slides: Didier's Alg., weak CI
10.02.2017 Metagenomics (by Alexander Sczyrba)

Examination dates

Oral exams will be on 23.02.2017. Please make an appointment with the secretary in U10-151, Heike Samuel.

If necessary, a second oral exam can be scheduled on an individual basis until end of March 2017.

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teaching/2016winter/alggr.txt · Last modified: 2017/02/23 14:22 by Jens Stoye