Implementation of Algorithms (1Ü)

392231 Wittler Winter 2017/18 Class hours by appointment ekvv
Final presentation:

January 25, 2018, 14ct in U10-146


Each participant implements a (simple) algorithm in a programming language of their own choice. Topics will be distributed individually: meet or send email to the organizer, a lecturer of any other class or seminar in the modules Algorithms in Bioinformatics or Sequence Analysis. The focus of the implementation shall be on code readability and optimal asymptotics, which ideally is verified by systematic testing.

The source code and some test data (where applicable) has to be sent to the organiser one week before the final presentation, i.e., January 18. During the final presentation, every participant runs and explains her/his software in front of everybody. If the result is not satisfactory, a correction can be provided until the end of the semester.

Distributed topics:
Topic Name Supervised by
Center-Star Approximation Timo Tizian
Gotoh Algorithm Steffi Tizian
Sankoff's Algorithm Sophia Roland
Progressives Alignment Ilja Roland
Sellers Algorithm Lena Roland
Agglomeratives Clustering Antonia Roland
Hirschbergalgorithmus Pia Roland
Waterman-Algorithmus Manuel Tizian
BWT - Aufbau und Rückwärtssuche Paul Tizian

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