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Implementation of Algorithms (1Ü)

392231 Stoye Summer 2018 Class hours by appointment ekvv
Final presentation:

Tuesday, July 10 at 14 c.t. in U10-146.


Each participant implements a (simple) algorithm in a programming language of their own choice. Topics will be distributed individually: meet or send email to the organizer, a lecturer of any other class or seminar in the modules Algorithms in Bioinformatics or Special Algorithmus in Bioinformatics. The focus of the implementation shall be on code readability and optimal asymptotics, which ideally is verified by systematic testing.

The source code and some test data (where applicable) has to be sent to the organiser one week before the final presentation. During the final presentation, every participant runs and explains her/his software in front of everybody. If the result is not satisfactory, a correction can be provided until the end of the semester.

Distributed topics:
Topic Name Supervised by
Neighbor Joining 1 Sarah Becker Roland
Agglomerative Clustering 1 Christina Drake Roland
Prim's Algorithm Vanessa Krämer Roland
Agglomerative Clustering 2 Stephanie Wrage Jens
Neighbor Joining 2 Sophia Hönig Jens
BWT incl. backward search Henrike Zimmermann Jens
Gotoh Nadine Behrmann Roland
Profile Hidden Markov Model Analysis Ilja Wolik Jens
Additive tree construction á la Waterman Manuel Feser Roland
Perfect Phylogeny Nils Lemke Jens
Sophia Hansen Roland
Antonia Leidel Roland
Andreas Remple Jens

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teaching/2018summer/algimpl.1526981703.txt · Last modified: 2018/05/22 09:35 by Jens Stoye