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teaching:2020summer:bioappgere [2020/02/14 09:07] 127.0.0.1 external edit |
teaching:2020summer:bioappgere [2020/02/25 15:32] tischulz [Overview] |
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| **Date** | **Topic** | **Presentation** | **Solution (for next day)** | | | **Date** | **Topic** | **Presentation** | **Solution (for next day)** | | ||
- | | Mon, 9.3. | Shell | Tizian: //Introduction to Python// | | | + | | Mon, 9.3. | Metagenomics | Tizian: //Metagenomics// | | |
- | | Tue, 10.3. | Assembly | TBA: //Genome Assembly, de Brujin Graphs// | | | + | | Tue, 10.3. | Hi-C Data Analysis | TBA: //HiCUP// | | |
- | | Wed, 11.3. | Finishing | TBA: //BWA// | | | + | | Wed, 11.3. | Haplotype Inference I | TBA: //WhatsHap// | | |
- | | Thu, 12.3. | Genome rearrangements I | TBA: //Rearrangement distances// | | | + | | Thu, 12.3. | Haplotype Inference II | TBA: //Integer Linear Programs// | | |
- | | Fri, 13.3. | Genome rearrangements II | TBA: //Circos tutorial// | | | + | | Fri, 13.3. | Assembly | TBA: //Genome Assembly, de Brujin Graphs// | | |
- | | Mon, 16.3. | Gene Prediction | TBA: //Gene Prediction (software: Glimmer, Prodigal)// | | | + | | Mon, 16.3. | Finishing | TBA: //BWA// | | |
- | | Tue, 17.3. | Hidden Markov Models (HMMs) | TBA: //HMMs// | | | + | | Tue, 17.3. | Genome rearrangements | TBA: //Rearrangement distances// | | |
- | | Wed, 18.3. | Position-Specific Scoring Matrices (PSSMs) | TBA: //PSSMs// | | | + | | Wed, 18.3. | Hidden Markov Models (HMMs) | TBA: //HMMs// | | |
- | | Thu, 19.3. | Metagenomics | TBA: //Metagenomics// | | | + | | Thu, 19.3. | Gene Prediction | TBA: //Gene Prediction (software: Glimmer, Prodigal)// | | |
| Fri, 20.3. | Finishing the Circos plot | -- | -- | | | Fri, 20.3. | Finishing the Circos plot | -- | -- | | ||