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--- teaching:2020summer:compan [2020/04/16 10:10]
tischulz [Contents]
+++ teaching:2020summer:compan [2020/07/06 11:52]
tischulz Removed Yannick from schedule
@@ Line 5: / Line 5: @@
 Office: U10-141\\
+\\
+**Important notice:**\\
+The seminar will take place as an online course via Zoom. Details for participation can be found at the [[ https://bis.uni-bielefeld.de/sites/27608/Start.aspx | Lernraum ]].
 ===== Contents =====
@@ Line 13: / Line 16: @@
 | 22.04.  | Preliminaries, topic selection |   |
-| 29.04.  | -- |      |
+| 29.04.  | Intro to LaTeX, reading | {{ :teaching:2020summer:compan:template.tar | latex sources }}, {{ :teaching:2020summer:compan:reading.pdf | Slides: HowToRead  }} |
-| 06.05.  | Intro to LaTeX, reading |   |
+| 06.05.  | Scientific writing | {{ :teaching:2020summer:compan:scientificwriting.pdf | Slides: ScientificWriting }}, [[ https://de.sharelatex.com/learn/bibtex_bibliography_styles | Bibliography Styles ]] |
-| 13.05.  | Scientific writing |                                        |
+| 13.05.  | Introductions, conclusions | {{ :teaching:2020summer:compan:introsconclusions.pdf | Slides: IntroductionConclusions }} |
-| 20.05.  | Introductions, conclusions |                     |
+| 20.05.  | Math | {{ :teaching:2020summer:compan:math_template.tar | latex sources }},  {{ :teaching:2020summer:compan:math.pdf | Slides: Math }}        |
-| 27.05.  | Math |                                                                                                                                                       |
+| 27.05.  | Tables, figures, algorithms | {{ :teaching:2020summer:compan:algo_template.tar | latex sources }},  {{ :teaching:2020summer:compan:tablesFiguresAlgos.pdf | Slides: TablesFiguresAlgorithms }} |
-| 03.06.  | Tables, figures, algorithms |                                                  |
+| 03.06.  | Checklist, writing | {{ :teaching:2020summer:compan:checklist.pdf | Slides: Checklist }} |
-| 10.06.  | Checklist, writing |                                                                                                                    |
+| 10.06.  | Intro to presentations (in LaTeX Beamer) | {{:teaching:2020summer:compan:beamer_template.tar | latex sources }}, [[ http://texdoc.net/texmf-dist/doc/latex/beamer/beameruserguide.pdf | beamer class doku ]], {{:teaching:2020summer:compan:checklist_presentations.pdf | Slides: Presentation Checklist }} |
-| 17.06.  | Intro to presentations (in LaTeX Beamer) |                                               |
+| 17.06.  | presentations (1) |                                               |
-| 24.06.  | presentations (1) |                                                                                                                    |
+| 24.06.  | presentations (2) |                                                                                                                    |
-| 01.07.  | presentations (2) |   |
+| 01.07.  | presentations (3) |   |
-| 08.07.  | presentations (3) |  |
+| 08.07.  | presentations (4) |  |
-| 15.07.  | presentations (4) |  |
+| 15.07.  | presentations (5) |  |
@@ Line 36: / Line 39: @@
 ^ Slot  ^ Student  ^ Paper                                                                                                                         ^
-|     |   |   |
+|  2   | Tizian  | {{ :teaching:2020summer:compan:bbw089.pdf  | Computational pan-genomics: status, promises and challenges }} |
+|   |  | [[ https://almob.biomedcentral.com/track/pdf/10.1186/s13015-016-0066-8 | Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage ]] |
+|  3  | <del>Yannick</del>  | [[ https://www.biorxiv.org/content/10.1101/695338v2.full.pdf | Bifrost - Highly parallel construction and indexing of colored and compacted de Bruijn graphs ]] |
+|  3  | Marvin  | [[ https://www.biorxiv.org/content/10.1101/234856v1.full.pdf | Sequence variation aware genome references and read mapping with the variation graph toolkit ]] |
+|  4  | Fabian  | [[ https://www.liebertpub.com/doi/pdfplus/10.1089/cmb.2019.0309 | Efficient Construction of a Complete Index for Pan-Genomics Read Alignment ]] |
+|  5  | Leonard  | [[ https://academic.oup.com/bioinformatics/article/35/19/3599/5372677 | Bit-parallel sequence-to-graph alignment ]] |
+|   |   | [[ https://www.biorxiv.org/content/10.1101/2020.01.21.914168v1.full.pdf | BlastFrost: Fast querying of 100,000s of bacterial genomes in Bifrost graphs ]] |
+|  4  | Aya  | [[ https://link.springer.com/content/pdf/10.1186/s13015-020-00164-3.pdf | Alignment- and reference-free phylogenomics with colored de Bruijn graphs ]] |
+|  5  | Christoph  | [[ https://www.biorxiv.org/content/10.1101/645721v1.full.pdf | Viral quasispecies reconstruction via contig abundance estimation in variation graphs ]] |
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Genome Informatics

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