Genome Informatics Research Seminar (2S)

Stoye

Winter 2023/24

Monday 14:15-15:45 in U10-146

In this seminar, current research of the Genome Informatics group is reported.

(In dieser Veranstaltung wird in Vorträgen über aktuelle Themen aus der Forschung der Arbeitsgruppe Genominformatik berichtet.)

Date	Topic	Name
09.10.2023	Organization of the seminar	Jens S
16.10.2023	Exceeding mutual exclusion bottlenecks in fork join parallelism on divisible data structures with application to highly parallel coloured de Bruijn graph construction (a.k.a. parallelizing SANS)	Fabian K
23.10.2023	–	–
30.10.2023	Panacus: Computing Pangenome Graph Statistics	Luca P
06.11.2023	(no class, visit of Fabian Hausmann)	–
13.11.2023	Genome graph transformations	Antonia L
20.11.2023	(no class, many in Amsterdam)	–
27.11.2023	capping-free SPP DCJ with indels	Leonard B
04.12.2023	k-mers based search engines for genomic sequencing data	Lucas R
11.12.2023	Inferred genomic, spatial and single cell hetereogeneity of human cancers	Franziska N
18.12.2023	(Christmas event)	–
Winter break
08.01.2024	An exact epsilon-match filter that is generalized to the application of k-mer sketches (that ensure a window guarantee)	Pina K
15.01.2024	Exceeding mutual exclusion bottlenecks in fork join parallelism on divisible data structures (v2)	Fabian K
22.01.2024	CARP	Leonard B
29.01.2024	Implementation of Algorithms	several students
11.03.2024	A BWT-Based Algorithm for Random de Bruijn Sequence Construction	Luca P