392172 | Robidou | Summer 2024 | Monday 10:00-12:00 | U10-155 |
We read and discuss research articles from different fields in computational biology. The specific articles are selected after discussions with the attendees. If no consensus is found, one paper will be imposed. The goal is that each participant will be able to present at least one paper during this semester.
To get credit points, students must show proficiency in reading, discussing, and presenting original research papers or other scientific literature.
Date | Topic | Name |
---|---|---|
08.04.2024 | Organization of the seminar | Robidou L, everybody |
15.04.2024 | Practical Entropy-Compressed Rank/Select Dictionary | Robidou L |
22.04.2024 | Practical Entropy-Compressed Rank/Select Dictionary | Robidou L |
29.04.2024 | Practical Entropy-Compressed Rank/Select Dictionary | Robidou L |
06.05.2024 | Finimizers: Variable-length bounded-frequency minimizers for k-mer sets | Rempel A |
13.05.2024 | Finimizers: Variable-length bounded-frequency minimizers for k-mer sets | Rempel A |
27.05.2024 | Succinct data structure for path graphs | Parmigiani L |
03.06.2024 | Succinct data structure for path graphs | Parmigiani L |
10.06.2024 | Fulgor: a fast and compact k-mer index for large-scale matching and color queries | Roland W |
17.06.2024 | Practical Implementations of Compressed RAM | Jens S |
24.06.2024 | Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT | Parmigiani L |
01.07.2024 | Canadians Should Travel Randomly | Robidou L |
15.07.2024 | Canadians Should Travel Randomly | Robidou L |