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Algorithms in Genome Research

392109/10 Stoye, Robidou Winter 2024/25 Fr 9:00-10:30 and 10:30-12:00 in U10-146

Contents

This class covers the basic algorithmic techniques used in the computational analysis of genome and post-genome data. This includes algorithms for genomic mapping and assembly, methods for functional genome annotation (gene finding and gene function prediction), algorithms for the analysis of DNA microarrays and mass spectra, methods and models for protein structure prediction, and algorithms for comparative genomics.

Literature

The page AlgGRLiterature contains many links to the original literature.

Time table

Date Topic Exercises
11.10.2024 Introduction, logistics
18.10.2024
25.10.2024 (LR)
01.11.2024 (holiday)
08.11.2024
15.11.2024
22.11.2024 (LR)
29.11.2024 (LR)
06.12.2024 (LR)
13.12.2024
20.12.2024
Winter break
10.01.2025
17.01.2025
24.01.2025 (LR)
31.01.2025 (LR)

Examination dates

Oral exams will be on 16 February 2024 or later. Please make an appointment with the secretary in U10-151, Nicole Schellenberg.

A second oral exam can be taken in March 2024. Please contact Nicole Schellenberg if you are interested.