Bioinformatics Journal Club

392169

Marília Braga

Summer 2009

Mo. 18-20 in U10-146

Section “Simulation of Evolution” (organized by Jens Stoye)
April 20	Rose	Eyla Willing
April 27	DAWG	Kai-Frederic Engelmann
indel-Seq-Gen, Strope ''et al.''	Stefan Marfilius
May 04	Varadarajan et al.	Christoph Brinkrolf
Ma et al.	Madis Rumming
*Section “Metabolic Reconstruction In Silico“* (organized by Patrick Schwientek)
May 11	paper selection
May 18	In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network	Heiko Neuweger
May 25	Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach	Nils Hoffmann
June 01	– holiday –
June 08	Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing	Daniel Dörr
June 15	at 17:15 CeBiTec Distinguished Lecture in ZiF	Rudolf Amann
June 22	Genome-scale reconstruction of ''Escherichia coli's'' transcriptional and translational machinery: a knowledge-base, its mathematical formulation, and its functional characterization	Jens Stoye
June 29	Natural computation meta-heuristics for in-silico optimization of microbial strains	Patrick Schwientek
Section “Combinatorics of Genome Rearrangements” (organized by Marília Braga)
July 06	Multichromosomal Genome Median and Halving Problems	Marília Braga
July 13	SCJ: a variant of breakpoint distance for which sorting, genome median and genome halving problems are easy	Jens Stoye

Genome Informatics