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Bioinformatics Journal Club


392169 Feijão Summer 2013 Thursday 18-20 in U10-155 ekvv

Contents

In this seminar we read and discuss current research articles from different fields in bioinformatics.

Topics

This semester, the articles will be selected from the Algorithmica Journal, and we will focus on articles with 100+ citations. We are using two citations databases to find the most cited papers:

Schedule

Date Topic Name Article
11.04.2013 Preliminaries Pedro Feijão —
18.04.2013 Algorithmica papers with 100+ citations Roland Wittler Fortune, S. (1987). A sweepline algorithm for Voronoi diagrams. Algorithmica, 2(1-4), 153–174. [PDF]
25.04.2013 Algorithmica papers with 100+ citations Annelyse Thévenin Ukkonen, E. (1995). On-line construction of suffix trees. Algorithmica, 14(3), 249–260. [PDF]
02.05.2013 (too close to a holiday) — —
09.05.2013 (Himmelfahrt) — —
16.05.2013 Algorithmica papers with 100+ citations Pedro Feijão Myers, E. (1986). An O(ND) difference algorithm and its variations. Algorithmica, 1(1-4), 251–266. [PDF]
23.05.2013 Algorithmica papers with 100+ citations — Postponed to 20.06
30.05.2013 (Fronleichnam) — —
06.06.2013 Algorithmica papers with 100+ citations Christina Ander Chew, L. (1989). Constrained delaunay triangulations. Algorithmica, (1-4), 97–108. [PDF]
13.06.2013 Algorithmica papers with 100+ citations Jens Stoye Kececioglu, J. & Sankoff, D. (1995). Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement. Algorithmica, 13(1/2), 180-210. [PDF]
20.06.2013 Algorithmica papers with 100+ citations Kai Bernd Stadermann Nagamochi, H., & Ibaraki, T. (1992). A linear-time algorithm for finding a sparse k-connected spanning subgraph of a k-connected graph. Algorithmica, 7, 583–596. [PDF]
27.06.2013 — — —
04.07.2013 Algorithmica papers with 100+ citations Daniel Dörr Feige, U., Peleg, D., & Kortsarz, G. (2001). The Dense k -Subgraph Problem. Algorithmica, 29(3), 410–421. [PDF]
11.07.2013 (AGGI Sommerausflug) — —
18.07.2013 (DiDy Application Workshop) — —
26.09.2013 — Katharina Jahn Combinatorial algorithms for DNA sequence assembly, J. D. Kececioglu, E. W. Myers, Algorithmica, February 1995, Volume 13, Issue 1-2, pp 7-51 [PDF]