Bioinformatics Journal Club (AG Genome Informatics)

Bioinformatics Journal Club, Winter 2005/2006

  • Organizers: Klaus-Bernd Schürmann, Jens Stoye
  • When: Every Tuesday at 18.00 c.t.
  • Where: V4-106

18.10.05 Vorbesprechung
08.11.05 Constantin Bannert Introduction HIV Talk
15.11.05 Sebastian Oehm HIV: Computational design of antiviral RNA interference strategies Paper
22.11.05 Sven Rahmann HIV: Learning Multiple Evolutionary Pathways from Cross-Sectional Data Paper1 ,
29.11.05 Sridhar Hariharaputran HIV: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes Paper
06.12.05 Klaus-Bernd Schürmann Introduction: A tutorial of recent developments in the seeding of local alignment. Brown et al. Paper
13.12.05 -- Christmas party
20.12.05 Jens Stoye
Wolfgang Gerlach
Efficient q-Gram Filters for Finding epsilon-Matches
Better filtering with gapped q-grams, Burkhardt and Kärkkäinen
10.01.06 José Augusto Amgarten Quitzau Designing seeds, Buhler et al. Paper
17.01.06 Brona Brejová Knowing more about alignments helps in finding them Paper1 Paper2
24.01.06 Lars Ulveland Introduction to Parameterized Complexity:
"Parameterized complexity for the skeptic", read chapters 1, 2, 3.2 and 4.3.1
"Ubiquitous parameterization...", read chapters 1, 2, 3, 4.2.


31.01.06 Ferdinando Cicalese Peter Damaschke:
On the fixed parameter enumerability of Cluster Editing
in proceeding of WG 2005, LNCS 3787 pp. 283-294, 2005.

Peter Damaschke:
Parametrized Enumeration, Transversals, and Imperfect Phylogeny Reconstruction
to appear in Theoretical Computer Science Special Issue IWPEC 2004 ,
Preliminary version in LNCS 3162, pp. 1-12.



07.02.06 Sebastian Böcker Jens Gramm and Rolf Niedermeier:
Breakpoint Medians and Breakpoint Phylogenies: A Fixed-Parameter Approach
Bioinformatics 18 (Suppl. 2), S128-S139, 2002. (Proceedings of ECCB 2002)