Bioinformatics Journal Club (AG Genome Informatics)

Bioinformatics Journal Club, Winter 2005/2006

Organizers: Klaus-Bernd Schürmann, Jens Stoye
When: Every Tuesday at 18.00 c.t.
Where: V4-106

18.10.05		Vorbesprechung
08.11.05	Constantin Bannert	Introduction HIV	Talk
15.11.05	Sebastian Oehm	HIV: Computational design of antiviral RNA interference strategies	Paper
22.11.05	Sven Rahmann	HIV: Learning Multiple Evolutionary Pathways from Cross-Sectional Data	Paper1 , Paper2
29.11.05	Sridhar Hariharaputran	HIV: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes	Paper
06.12.05	Klaus-Bernd Schürmann	Introduction: A tutorial of recent developments in the seeding of local alignment. Brown et al.	Paper
13.12.05	--	Christmas party
20.12.05	Jens Stoye Wolfgang Gerlach	Efficient q-Gram Filters for Finding epsilon-Matches Better filtering with gapped q-grams, Burkhardt and Kärkkäinen	Paper1 Paper2
10.01.06	José Augusto Amgarten Quitzau	Designing seeds, Buhler et al.	Paper
17.01.06	Brona Brejová	Knowing more about alignments helps in finding them	Paper1 Paper2
24.01.06	Lars Ulveland	Introduction to Parameterized Complexity: "Parameterized complexity for the skeptic", read chapters 1, 2, 3.2 and 4.3.1 "Ubiquitous parameterization...", read chapters 1, 2, 3, 4.2.	Downey Niedermeier
31.01.06	Ferdinando Cicalese	Peter Damaschke: On the fixed parameter enumerability of Cluster Editing in proceeding of WG 2005, LNCS 3787 pp. 283-294, 2005. Peter Damaschke: Parametrized Enumeration, Transversals, and Imperfect Phylogeny Reconstruction to appear in Theoretical Computer Science Special Issue IWPEC 2004 , Preliminary version in LNCS 3162, pp. 1-12.	Damaschke1 Damaschke2
07.02.06	Sebastian Böcker	Jens Gramm and Rolf Niedermeier: Breakpoint Medians and Breakpoint Phylogenies: A Fixed-Parameter Approach Bioinformatics 18 (Suppl. 2), S128-S139, 2002. (Proceedings of ECCB 2002)	GrammNiedermeier